BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0214.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310505|ref|YP_003774597.1| V-type H(+)-translocating pyrop...   230   6e-62

>gi|300310505|ref|YP_003774597.1| V-type H(+)-translocating
           pyrophosphatase [Herbaspirillum seropedicae SmR1]
          Length = 682

 Score =  230 bits (587), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/128 (87%), Positives = 123/128 (96%)

Query: 15  MAGALWFAVACGVVAVIYGLISRSWILKQDPGNQRMQDIATAIQQGAAAYLARQYRTIAL 74
           MA ALWFA+ACG+VAVIYGL+SR+WILKQDPGN RMQDIA AIQQGA+AYLARQYRTIA+
Sbjct: 3   MALALWFAIACGIVAVIYGLVSRNWILKQDPGNPRMQDIALAIQQGASAYLARQYRTIAM 62

Query: 75  VGVVLFILIALIPGLGWITAVGFLIGAVLSGACGFIGMNVSVRANVRTAQAATKGMNEAL 134
           VGVVL ILIALIPGLGW+TA+GFL+GAVLSGACGFIGMNVSVRANVRTAQAAT+GMN+AL
Sbjct: 63  VGVVLLILIALIPGLGWLTAIGFLLGAVLSGACGFIGMNVSVRANVRTAQAATQGMNQAL 122

Query: 135 NVAFRGGA 142
            VAFRGGA
Sbjct: 123 AVAFRGGA 130



 Score =  127 bits (319), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 72/79 (91%), Gaps = 4/79 (5%)

Query: 144 PITDNAGGIAEMSGMPESVRAITDPLDAVGNTTKAVTKGYAIGSAGLAALVLFADYTHAL 203
           PITDNAGGIAEMSG+PESVRAITDPLDAVGNTTKAVTKGYAIGSAGLAALVLFADYTHAL
Sbjct: 428 PITDNAGGIAEMSGLPESVRAITDPLDAVGNTTKAVTKGYAIGSAGLAALVLFADYTHAL 487

Query: 204 DAVGKYPRVAATTSATAPA 222
           ++VGK    +A+   ++PA
Sbjct: 488 ESVGK----SASFDLSSPA 502


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 754,716
Number of extensions: 30840
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)