BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0213.p
         (481 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310505|ref|YP_003774597.1| V-type H(+)-translocating pyrop...   781   0.0  

>gi|300310505|ref|YP_003774597.1| V-type H(+)-translocating
           pyrophosphatase [Herbaspirillum seropedicae SmR1]
          Length = 682

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/436 (91%), Positives = 423/436 (97%)

Query: 1   MAADLFETYVVTLIATMLLGSLVIKGGEVLAVLYPLALGGVSILASIVGCMMVKVAPGKK 60
           MAADLFETYVVTL+ATMLLGSL++ G E LAVLYPLALGGVSILASIVGC MVK  PGKK
Sbjct: 233 MAADLFETYVVTLVATMLLGSLMLTGMETLAVLYPLALGGVSILASIVGCAMVKAQPGKK 292

Query: 61  IMSALYTGLWWAAILSLIGFAVITWTMVPPELRVPLMGSAVIGIVLTGLMVYITEYYTGT 120
           IMSALYTGLWWAA LSLIGFAV+TW ++PP LRVPLMG+AV+GI LTGLMVYITEYYTGT
Sbjct: 293 IMSALYTGLWWAAGLSLIGFAVVTWLLLPPPLRVPLMGAAVVGIALTGLMVYITEYYTGT 352

Query: 121 DFKPVKHIAQASTTGHGTNIIAGLGVSMKSTAYPVLAVCAAILASYWLAGLYGIAIAATS 180
           DFKPV+HIAQASTTGHGTNIIAGLGVSMKSTAYPVLAVCAAIL SYWLAGLYGIAIAATS
Sbjct: 353 DFKPVQHIAQASTTGHGTNIIAGLGVSMKSTAYPVLAVCAAILLSYWLAGLYGIAIAATS 412

Query: 181 MLSMAGIIVALDAYGPITDNAGGIAEMSGMPESVRAITDPLDAVGNTTKAVTKGYAIGSA 240
           MLSMAGI+VALDAYGPITDNAGGIAEMSG+PESVRAITDPLDAVGNTTKAVTKGYAIGSA
Sbjct: 413 MLSMAGIVVALDAYGPITDNAGGIAEMSGLPESVRAITDPLDAVGNTTKAVTKGYAIGSA 472

Query: 241 GLAALVLFADYTHALDAVGKSTSFDLSNPMVIVGLFIGGLIPYLFGAMAMEAVGRAAGAV 300
           GLAALVLFADYTHAL++VGKS SFDLS+P VI+GLFIGGLIPYLFGAMAMEAVGRAAGAV
Sbjct: 473 GLAALVLFADYTHALESVGKSASFDLSSPAVIIGLFIGGLIPYLFGAMAMEAVGRAAGAV 532

Query: 301 VIEVRRQFSEIKGIMDGSGKPEYDKAVDMLTSSAIKEMIVPSLLPVIVPIIVGLLLGPAA 360
           V+EVRRQFSEIKGIMDGSG+PEYDKAVDMLTSSAI+EMI+PSLLPVIVPI+VG+LLGP+A
Sbjct: 533 VVEVRRQFSEIKGIMDGSGRPEYDKAVDMLTSSAIREMILPSLLPVIVPILVGMLLGPSA 592

Query: 361 LGGLLMGTIVTGLFVAISMTTGGGAWDNAKKYIEDGHHGGKGSDAHKAAVTGDTVGDPYK 420
           LGGLLMGTIVTGLFVAISMTTGGGAWDNAKKYIEDGHHGGKGS+AHKAAVTGDTVGDPYK
Sbjct: 593 LGGLLMGTIVTGLFVAISMTTGGGAWDNAKKYIEDGHHGGKGSEAHKAAVTGDTVGDPYK 652

Query: 421 DTAGPAVNPLIKIINI 436
           DTAGPAVNPLIKIINI
Sbjct: 653 DTAGPAVNPLIKIINI 668


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,405,385
Number of extensions: 61574
Number of successful extensions: 267
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 392
Effective length of database: 1,198,455
Effective search space: 469794360
Effective search space used: 469794360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)