BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0199.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310518|ref|YP_003774610.1| FKBP-type peptidyl-prolyl cis-t...   266   5e-73

>gi|300310518|ref|YP_003774610.1| FKBP-type peptidyl-prolyl
           cis-trans isomerase [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  266 bits (680), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 129/151 (85%), Positives = 137/151 (90%)

Query: 1   MSNVSVPVVTETAYLTLHYRLASLTGENIVSTFEEKPATLQFGQGQLAPFLEACLLGLPE 60
           MS+ SVPVVTE AYLTLHYRLASL GE+IVSTF E PATLQFGQGQLAPFLE+CLLGLPE
Sbjct: 8   MSSPSVPVVTENAYLTLHYRLASLEGEDIVSTFNENPATLQFGQGQLAPFLESCLLGLPE 67

Query: 61  GVHQTFELAPEQAFGPRNPELIQRISRATLEENSSMDEDYRVGDLVDFAAPGGGRFAGVL 120
           G HQTFELAP QAFG R  EL+QRISRATLEENSSMDE YR+GDLVDFAAPGGGRFAG+L
Sbjct: 68  GAHQTFELAPAQAFGERTDELVQRISRATLEENSSMDEQYRIGDLVDFAAPGGGRFAGIL 127

Query: 121 REIDAQGALFDFNHPLAGQTLKFEVKIIGIL 151
           R +D  GA+FDFNHPLAGQTLKFEVKIIGIL
Sbjct: 128 RAMDDDGAIFDFNHPLAGQTLKFEVKIIGIL 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 519,819
Number of extensions: 22553
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)