BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0198.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310519|ref|YP_003774611.1| 4-hydroxy-3-methylbut-2-enyl di...   560   e-161

>gi|300310519|ref|YP_003774611.1| 4-hydroxy-3-methylbut-2-enyl
           diphosphate reductase [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  560 bits (1442), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/313 (86%), Positives = 292/313 (93%)

Query: 2   LDMDKQESEILLAQPRGFCAGVDRAIEIVERALTQFGAPIYVRHEIVHNAYVVADLRNKG 61
           + MDK ESEILLAQPRGFCAGVDRAIEIVERAL QFGAPIYVRHEIVHNAYVV DLR KG
Sbjct: 1   MTMDKAESEILLAQPRGFCAGVDRAIEIVERALAQFGAPIYVRHEIVHNAYVVNDLRAKG 60

Query: 62  AIFIEELADVPAGNTVIFSAHGVSKAVQAEAQERGLTVFDATCPLVTKVHIEVAKMRREG 121
           A+FIEELADVPAG+TVIFSAHGVSKA+QAEA ERGLTVFDATCPLVTKVH+EVAKMRREG
Sbjct: 61  AVFIEELADVPAGSTVIFSAHGVSKAIQAEAAERGLTVFDATCPLVTKVHMEVAKMRREG 120

Query: 122 REIIMIGHEGHPEVEGTMGQTEAGMYLVETVDDVLKLQVTDPDLLAYVSQTTLSVDDTTD 181
           REIIMIGH GHPEVEGTMGQTEAGM+LVETV+DV +LQV DP LLAYVSQTTLSVDDT +
Sbjct: 121 REIIMIGHAGHPEVEGTMGQTEAGMHLVETVEDVQRLQVADPALLAYVSQTTLSVDDTAE 180

Query: 182 IIAALKQRFPTIAEPKKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLREVAE 241
           IIAAL++RFP I+EPKKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLRE+AE
Sbjct: 181 IIAALRERFPAISEPKKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLRELAE 240

Query: 242 KKGVPAYMVDNAELIKQEWLDGKRRVGVTAGASAPEVLVQAVIDRIKEGSLRSVRILEGI 301
           KKGV A+MVDNA LI   W+ G++R+GVTAGASAPEVLVQAVIDRIKE   RSVR+LEGI
Sbjct: 241 KKGVAAFMVDNAALIDPLWIQGRQRIGVTAGASAPEVLVQAVIDRIKEIGARSVRVLEGI 300

Query: 302 EEHVTFPMPKGLG 314
           EE+VTFP+PKGLG
Sbjct: 301 EENVTFPLPKGLG 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 984,358
Number of extensions: 40260
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)