BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0192.p
         (60 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t...   111   9e-27
gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t...   111   9e-27
gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t...    60   3e-11
gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa...    59   9e-11
gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t...    58   2e-10

>gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  111 bits (278), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 56/59 (94%)

Query: 1   VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMSGNAKDMLNDPRVKAAYLGE 59
           VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITM G A+ ML+DPRVKAAYLGE
Sbjct: 182 VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240


>gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  111 bits (278), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 56/59 (94%)

Query: 1   VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMSGNAKDMLNDPRVKAAYLGE 59
           VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITM G A+ ML+DPRVKAAYLGE
Sbjct: 182 VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240


>gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 60.5 bits (145), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 1   VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMSGNAKDMLNDPRVKAAYLG 58
           +I  +  QG+T+LLVEQ A  AL  A  GYV+E+G I++ G A  + NDP VKAAYLG
Sbjct: 180 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237


>gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score = 58.5 bits (140), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 41/58 (70%)

Query: 1   VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMSGNAKDMLNDPRVKAAYLG 58
           +++ ++  G+T+LLVEQN + AL  A RGYV+E+G I +  +  ++L +P+V  AYLG
Sbjct: 185 IVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242


>gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 1   VIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMSGNAKDMLNDPRVKAAYLGEA 60
           +IR +   G+T+ LVEQNA  AL  A RGYV+E+G + MS    ++L +  V+ AYLG  
Sbjct: 176 IIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 160,214
Number of extensions: 4426
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 7
Length of query: 60
Length of database: 1,619,870
Length adjustment: 33
Effective length of query: 27
Effective length of database: 1,463,615
Effective search space: 39517605
Effective search space used: 39517605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)