BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0185.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309523|ref|YP_003773615.1| bifunctional proline dehydrogen...   443   e-126

>gi|300309523|ref|YP_003773615.1| bifunctional proline
            dehydrogenase/proline oxidase
            delta-1-pyrroline-5-carboxylate dehydrogenase
            [Herbaspirillum seropedicae SmR1]
          Length = 1230

 Score =  443 bits (1140), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/334 (68%), Positives = 258/334 (77%), Gaps = 4/334 (1%)

Query: 1    LLAHVEQMKKGGK-VYQLPLDERHQYGTYVAPTVIEIDSIAQLKREVFGPVLHVLRYRRD 59
            LL H+E+M+   + V+QLPL E  Q+GT+VAPTVIEID +AQL+REVFGPVLHVLRYRRD
Sbjct: 897  LLDHIERMRASARAVHQLPLGEECQHGTFVAPTVIEIDDLAQLQREVFGPVLHVLRYRRD 956

Query: 60   QLPQLIDTINASGYGLTLGVHSRIDETIAFVAERAHVGNIYVNRNIVGAVVGVQPFGGEG 119
             LPQLID INA+GYGLTLGVHSRIDETI FVA+RAHVGNIYVNRNIVGAVVGVQPFGGEG
Sbjct: 957  ALPQLIDAINATGYGLTLGVHSRIDETIEFVAQRAHVGNIYVNRNIVGAVVGVQPFGGEG 1016

Query: 120  KSGTGPKAGGPLYLKRLQRHADVKLFNDAAQAASQP---LKSLLDWAATHGHAKLAQLGA 176
            KSGTGPKAGGPLYLKRLQR+A +      AQ A  P   L SLLDWA THGH +LA  G 
Sbjct: 1017 KSGTGPKAGGPLYLKRLQRNAQLHEELTRAQPADVPNALLDSLLDWARTHGHERLAANGQ 1076

Query: 177  TYVQESLLHRTLTLPGPTGERNTLSFAPRGKILCAAADVAALLNQVAAVLATGNIAVVPA 236
             Y ++SLL R+L LPGPTGERNTL FAPRG +LCAA  V  LLNQ+AA  ATGN A+V  
Sbjct: 1077 RYHRDSLLQRSLVLPGPTGERNTLGFAPRGLVLCAAGSVGTLLNQLAAAFATGNTALVDE 1136

Query: 237  AQGKLIPAGLPAEARQAIELSGDVAALDLHLALVDGPVITQWRGLLAARDGALVPLVPTA 296
                ++P+GLPA  R AI  +  + A  L  ALVD      WR  LAAR+GALVPL+   
Sbjct: 1137 RSAAILPSGLPAPVRAAIRRASQLDAEPLQAALVDSHQAAHWRARLAAREGALVPLILCG 1196

Query: 297  EDLPIDLWRLVAERALCVNTTAAGGNASLMTLSV 330
            ED  I LWRL+AERALC+NTTAAGGNASLMT+SV
Sbjct: 1197 EDTTIPLWRLLAERALCINTTAAGGNASLMTISV 1230


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,057,947
Number of extensions: 44235
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)