BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0176.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogen...   601   e-173
gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogen...   486   e-139

>gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  601 bits (1549), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 287/364 (78%), Positives = 316/364 (86%), Gaps = 3/364 (0%)

Query: 1   VILCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLRAAPHIIWPLRFV 60
           V+LCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLR+APHIIWPLRFV
Sbjct: 30  VLLCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLRSAPHIIWPLRFV 89

Query: 61  MPHDAGQRPVWLIRAGLLMYDYLAKREILPASQGLKLNEHAAGKPLKGDYRRGFVYSDGW 120
           MPHDA QRP W+IRAGL MYD+LAKREILP S+G  L  H AG+PLKGDYR+GFVYSDGW
Sbjct: 90  MPHDANQRPAWMIRAGLFMYDHLAKREILPPSEGANLARHDAGQPLKGDYRKGFVYSDGW 149

Query: 121 VDDARLVALNALDASERGARIFTRTKCIEARREGDLWRAALENRQDGRIQ---VQARAIV 177
           VDDARLV LNA+DA ERGARI TRTKCI ARREGD+W A LE++++G +Q   V+ARAIV
Sbjct: 150 VDDARLVVLNAMDAQERGARILTRTKCISARREGDIWHAVLEHQREGGVQQEEVRARAIV 209

Query: 178 NAAGPWTAQFADAVPGASKSYGLRLIKGSHIVVKRLFDHPYAYIFQNPDKRIIFAIPYQD 237
           NAAGPW A+FA AVP A     LRLIKGSHIVVKR+FDHPYAYIFQNPDKRIIFAIPYQ+
Sbjct: 210 NAAGPWAARFAQAVPQAKSGRSLRLIKGSHIVVKRMFDHPYAYIFQNPDKRIIFAIPYQE 269

Query: 238 DFTLIGTTDLEYTGDAGKVEISTDEIDYLCEMANRYFTRQISSSDVVWTYSGVRPLLDDN 297
           +FTLIGTTDLEY GDAGKVEI   EIDYLC+MANRYF RQI   DVVWTYSGVRPLLDD+
Sbjct: 270 EFTLIGTTDLEYHGDAGKVEIDAAEIDYLCDMANRYFKRQIGKEDVVWTYSGVRPLLDDS 329

Query: 298 SSNASAVTRDYLLECNDNGAPMLNVWGGKITTYRKLAEEALAVLSPRLGFKARCCCAPRR 357
           + NASA+TRDYLLEC+D GAPMLNVWGGKITTYRKLAEEALA+L+P LG  ++   A   
Sbjct: 330 AENASAITRDYLLECDDAGAPMLNVWGGKITTYRKLAEEALAMLAPHLGASSQSWTAGAP 389

Query: 358 ISSG 361
           +  G
Sbjct: 390 LPGG 393


>gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  486 bits (1252), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/347 (66%), Positives = 280/347 (80%), Gaps = 2/347 (0%)

Query: 1   VILCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLRAAPHIIWPLRFV 60
           V LCEQHDLAQHTSS+S+KLIHGGLRYLE+YEF LVRKAL EREVLLR+APHI+WPLRFV
Sbjct: 40  VALCEQHDLAQHTSSSSSKLIHGGLRYLEHYEFGLVRKALIEREVLLRSAPHIMWPLRFV 99

Query: 61  MPHDAGQRPVWLIRAGLLMYDYLAKREILPASQGLKLNEHAAGKPLKGDYRRGFVYSDGW 120
           MPHD GQRP WLIR G+ +YD+LA+RE+LP S+ L L  HA+G PLK  + RGFVYSDGW
Sbjct: 100 MPHDQGQRPAWLIRLGMFLYDHLARRELLPGSRALDLRRHASGAPLKAQFTRGFVYSDGW 159

Query: 121 VDDARLVALNALDASERGARIFTRTKCIEARREGDLWRAALENRQDGR-IQVQARAIVNA 179
           VDDARLV LNA+DA+E+GA I TRT+C    R+ + W+A L  R+DG  +QV+AR +VNA
Sbjct: 160 VDDARLVVLNAMDAAEKGAHIMTRTRCESLTRQDNGWQAVL-RREDGHAMQVRARCVVNA 218

Query: 180 AGPWTAQFADAVPGASKSYGLRLIKGSHIVVKRLFDHPYAYIFQNPDKRIIFAIPYQDDF 239
           AGPW AQF         S  +RL+KGSHIVV RLF+H +AYIFQNPD RI+FAIPY+ DF
Sbjct: 219 AGPWVAQFLGGAAHVHSSKSVRLVKGSHIVVPRLFEHDHAYIFQNPDGRIVFAIPYEQDF 278

Query: 240 TLIGTTDLEYTGDAGKVEISTDEIDYLCEMANRYFTRQISSSDVVWTYSGVRPLLDDNSS 299
           TLIGTTD+EY G    V IS DE  YLC++ANRYF + I+  DVVW+YSGVRPLL+D ++
Sbjct: 279 TLIGTTDIEYQGRVEDVAISADETAYLCQLANRYFEKPITPDDVVWSYSGVRPLLEDAAA 338

Query: 300 NASAVTRDYLLECNDNGAPMLNVWGGKITTYRKLAEEALAVLSPRLG 346
           +ASAVTRDY L+ N  GAP+L+++GGKITT+RKLAEEA+ +++P LG
Sbjct: 339 DASAVTRDYQLDLNLQGAPLLSIFGGKITTFRKLAEEAVDMIAPVLG 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,190,339
Number of extensions: 49043
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)