BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0175.p
         (127 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogen...   151   1e-38
gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogen...    91   3e-20

>gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  151 bits (382), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/120 (65%), Positives = 91/120 (75%), Gaps = 3/120 (2%)

Query: 4   TSGAPRWRIXPGDLEQPGKLVRRYDFARFLAGFSERHSWLPPALAKRYARSYGSRAERLL 63
           T+GAP   +  GDLEQPGK+V RYDF  +L  F  RH WLP  LA RYARSYGSR E+++
Sbjct: 385 TAGAP---LPGGDLEQPGKMVARYDFDAYLRKFQARHPWLPAELAHRYARSYGSRVEQII 441

Query: 64  KGAAALADLGEELAPGLYESEARYLRDVEWACSAEDILWRRSKLGLYCRPQHVERLQQWL 123
             A +LA LGEEL+PGLYE+EARYL   EWA SA+DILWRRSKLGL+C PQH  RL+ WL
Sbjct: 442 GQADSLAALGEELSPGLYEAEARYLVQHEWARSADDILWRRSKLGLHCGPQHRGRLEAWL 501


>gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score = 90.9 bits (224), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 5/112 (4%)

Query: 15  GDL--EQP-GKLVRRYDFARFLAGFSERHSWLPPALAKRYARSYGSRAERLLKGAAALAD 71
           GDL   QP  + VR++D  +++ G  +++ WLP AL +RYAR+YGSR   LL+G   + +
Sbjct: 400 GDLYGAQPSNRSVRQFD--QYVQGLQQQYPWLPAALLQRYARAYGSRTHTLLEGRQNVEE 457

Query: 72  LGEELAPGLYESEARYLRDVEWACSAEDILWRRSKLGLYCRPQHVERLQQWL 123
           +GEE+  GLY +E  YL   EWA +A DILWRRSKLGL+        L  WL
Sbjct: 458 MGEEILDGLYAAEVDYLLRHEWASNAADILWRRSKLGLHFPKGSEAVLDAWL 509


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 383,421
Number of extensions: 11392
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,264,745
Effective search space: 65766740
Effective search space used: 65766740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)