BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0174.p (146 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [H... 253 3e-69 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 121 2e-29 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 113 6e-27 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 109 8e-26 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 109 8e-26 >gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 366 Score = 253 bits (647), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 123/143 (86%), Positives = 134/143 (93%) Query: 1 VTLELKQVTKSVGAETHLYPLDLKLAAGGINVLLGPTQAGKTSLMRIIAGLDKPGSGSVL 60 +TLELKQV K+VGAETHLYPLDL LA GGINVLLGPTQAGKTSLMRIIAGLDKP +G VL Sbjct: 1 MTLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 Query: 61 VDGKDVTGVGVRERNLAMVYQQFINYPGLSVYENIASPLRLKKLPQQEIHQRVTEIAEKL 120 VDG+DVTGVGVRERNLAMVYQQFINYPGL+V+ENIA+PLRL+K P+QEI +RV EIA+KL Sbjct: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKL 120 Query: 121 HIAHLLQRLPGELSGGQQQRTAL 143 HIAHLLQRLPGELSGGQQQR AL Sbjct: 121 HIAHLLQRLPGELSGGQQQRCAL 143 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 121 bits (304), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/142 (42%), Positives = 93/142 (65%) Query: 2 TLELKQVTKSVGAETHLYPLDLKLAAGGINVLLGPTQAGKTSLMRIIAGLDKPGSGSVLV 61 + L+ V K G + +D ++ AG VLLGP+ GK++ +R+IAGLDKP SGS+ + Sbjct: 3 AISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHI 62 Query: 62 DGKDVTGVGVRERNLAMVYQQFINYPGLSVYENIASPLRLKKLPQQEIHQRVTEIAEKLH 121 G+DVT + +R ++MV+Q + +P LSV +NI +R++K P+ R+ +A+ L Sbjct: 63 GGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILG 122 Query: 122 IAHLLQRLPGELSGGQQQRTAL 143 +AHLL+R P +LSGGQQQR AL Sbjct: 123 LAHLLERRPAQLSGGQQQRVAL 144 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 113 bits (282), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 4/147 (2%) Query: 1 VTLELKQVTKSVGAETHLYPLDLKLAAGGINVLLGPTQAGKTSLMRIIAGLDKPGSGSVL 60 +++E+ + K G+ T L + L AG + LLGP+ GKT+L+RIIAGL+ P SG VL Sbjct: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 Query: 61 VDGKDVTGVGVRERNLAMVYQQFINYPGLSVYENIASPLRLKKLPQQE----IHQRVTEI 116 +DG+D + VRER + V+Q + + ++V+ENIA LR+K Q+ I ++V + Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRL 120 Query: 117 AEKLHIAHLLQRLPGELSGGQQQRTAL 143 E + + L R P +LSGGQ+QR AL Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIAL 147 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 109 bits (273), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 89/143 (62%), Gaps = 1/143 (0%) Query: 2 TLELKQVTKSVG-AETHLYPLDLKLAAGGINVLLGPTQAGKTSLMRIIAGLDKPGSGSVL 60 ++ L+ K+ G A + +DL + V LGP+ GK++L+R IAGL+ SG + Sbjct: 3 SITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLF 62 Query: 61 VDGKDVTGVGVRERNLAMVYQQFINYPGLSVYENIASPLRLKKLPQQEIHQRVTEIAEKL 120 + GK V V +R++AMV+Q + +P ++VYEN++ L L KLP+ EI Q+V E A L Sbjct: 63 IGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARIL 122 Query: 121 HIAHLLQRLPGELSGGQQQRTAL 143 + LLQR P ELSGGQ+QR A+ Sbjct: 123 QLEELLQRKPKELSGGQRQRVAI 145 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 109 bits (273), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 96/146 (65%), Gaps = 4/146 (2%) Query: 2 TLELKQVTKSVGAETH----LYPLDLKLAAGGINVLLGPTQAGKTSLMRIIAGLDKPGSG 57 + LKQV K+ GA T ++ +D ++A G V++GP+ GK++L+R++AGL++ SG Sbjct: 3 AIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSG 62 Query: 58 SVLVDGKDVTGVGVRERNLAMVYQQFINYPGLSVYENIASPLRLKKLPQQEIHQRVTEIA 117 +++ + V + +ER++AMV+Q + YP ++VY+N+A L+++ L + EI RV A Sbjct: 63 QIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAA 122 Query: 118 EKLHIAHLLQRLPGELSGGQQQRTAL 143 L + LL+R P +LSGGQ+QR A+ Sbjct: 123 AILELGALLERTPRQLSGGQRQRVAM 148 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 471,646 Number of extensions: 19595 Number of successful extensions: 316 Number of sequences better than 1.0e-08: 81 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 82 Length of query: 146 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 69 Effective length of database: 1,255,275 Effective search space: 86613975 Effective search space used: 86613975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)