BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0173.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [H... 327 5e-91 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 98 7e-22 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 95 5e-21 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 92 2e-20 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 92 2e-20 >gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 366 Score = 327 bits (838), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 166/218 (76%), Positives = 186/218 (85%), Gaps = 6/218 (2%) Query: 1 LIKRAPLVLLDEPLVNLDYKLREELRSELISLFTSGDTTVVYATTEPQEALLLGGHTAVM 60 LIKRAPLVLLDEPLVNLDYKLREELRSELISLF +GDTTVVYATTEPQEALLLGGHTAVM Sbjct: 147 LIKRAPLVLLDEPLVNLDYKLREELRSELISLFATGDTTVVYATTEPQEALLLGGHTAVM 206 Query: 61 HAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNMLAATAIDN----ASVKLDDGSVLSVA 116 H GRLLQF PTL+LFN+PAST+VAAIFNDPPMN+L ATAI + A++ + DGSVL +A Sbjct: 207 HQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNLLEATAIASAPGVAAICMSDGSVLEIA 266 Query: 117 GRNLALTAGQRCRVGIRCNDVRLQAGNSAGASVTLACTVGLAELSGSETYLHLRHGGDAL 176 GR LAL+ GQ C++GIRCNDVRL+A G V+L C+V LAELSGSETYLHLRHG L Sbjct: 267 GRPLALSEGQSCKLGIRCNDVRLEA--LTGPGVSLGCSVTLAELSGSETYLHLRHGEVPL 324 Query: 177 VAQLPGVHALEIGSAVQVNINAAQIFLFDTEGRLLSAP 214 VAQL GVH + IGS VQV+I AA+ FLFDT+GRLLSAP Sbjct: 325 VAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLSAP 362 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 97.8 bits (242), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 1 LIKRAPLVLLDEPLVNLDYKLREELRSELISLFTSGDTTVVYATTEPQEALLLGGHTAVM 60 ++++ + L DEPL NLD KLR ++R E+ L S TT +Y T + EA+ LG VM Sbjct: 152 IVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVM 211 Query: 61 HAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNMLAAT-AIDNASVKLDDGSVLSVAGRN 119 + G Q G +++ PA+T VA+ PPMN+L + D AS ++ G+ + Sbjct: 212 NRGVAEQIGTPAEVYARPATTFVASFIGSPPMNLLQGKLSADGASFEVSKGNASDILRLP 271 Query: 120 LALT--AGQRCRVGIRCNDVRLQAGNSAGASVTLACTVGLAELSGSETYLHLRHGGDALV 177 LT AGQ +G+R + G++ L+ V L E G+E +H R GG ALV Sbjct: 272 QPLTGAAGQERILGVRPEHL---LPILDGSAAQLSLEVELVEALGAELLVHARCGGQALV 328 Query: 178 AQLPGVHALEIGSAVQVNINAAQIFLFDTE 207 + P + G + + A + FD + Sbjct: 329 LRCPANVQVRTGQRIGASFGAGDVHWFDVK 358 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 1 LIKRAPLVLLDEPLVNLDYKLREELRSELISLFTSGDTTVVYATTEPQEALLLGGHTAVM 60 +IK + L DEPL NLD KLR +LR ++ L TT VY T + EA+ L +M Sbjct: 149 IIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILM 208 Query: 61 HAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNMLAATAIDNASVKLDDGSV-LSVAGRN 119 GR++Q G +L+ P + A P MN L+ T V+ DG + + A + Sbjct: 209 QDGRIVQAGSPAELYRYPRNLFAAGFIGTPAMNFLSGT------VQRQDGQLFIETAHQR 262 Query: 120 LALTAGQR---------CRVGIRCNDVRLQAGNSAGASVTLACTVGLAELSGSETYLHLR 170 ALT G+R ++ +R + VR+ AS+T +V L E+ G++ L R Sbjct: 263 WALT-GERFSRLRHAMAVKLAVRPDHVRIAGEREPAASLTCPVSVELVEILGADALLTTR 321 Query: 171 HGGDALVAQLPGVHALEIGSAVQVNINAAQIFLFDTE-GRLLSAP 214 G L A +P + G+ + + ++ ++ +FD E G LS P Sbjct: 322 CGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESGENLSLP 366 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 104/217 (47%), Gaps = 12/217 (5%) Query: 2 IKRAPLVLL-DEPLVNLDYKLREELRSELISLFTSGDTTVVYATTEPQEALLLGGHTAVM 60 I R P V L DEPL NLD LR ++R E L TT++Y T + EA+ L V+ Sbjct: 148 ITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVL 207 Query: 61 HAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNML----AATAIDNASVKLDDGSVLSVA 116 GR+ Q G QL++ PA+ VA P MN + AA D V+L G + A Sbjct: 208 SEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAA 267 Query: 117 GRNLALTAGQRCRVGIRCNDVRLQAGNSAGASVTLACTVGLAELSGSETYLHLRHGG--D 174 L GQ+ +G+R + + G A++ CT EL G +YL+ + G D Sbjct: 268 VDGSTLQVGQKVTLGVRPEHLNIAQGQ---AALQARCTA--LELLGDFSYLYAAYEGSED 322 Query: 175 ALVAQLPGVHALEIGSAVQVNINAAQIFLFDTEGRLL 211 AL+ ++P GS + + + A+ LF +G+ L Sbjct: 323 ALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQAL 359 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 9/216 (4%) Query: 1 LIKRAPLVLLDEPLVNLDYKLREELRSELISLFTSGDTTVVYATTEPQEALLLGGHTAVM 60 ++++ L L DEPL NLD LR + R E+ L T+VY T + EA+ LG VM Sbjct: 149 IVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLHRQLAATIVYVTHDQVEAMTLGDKIVVM 208 Query: 61 HAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNML--AATAIDNASVKLDDGSVLSVAG- 117 H GR+ Q G L+L+ P + VA P MN T D++ V+++ L + Sbjct: 209 HEGRIQQAGTPLELYQQPQNLFVAGFIGSPKMNFFQGVVTRCDDSGVQVEIAGGLRLLAD 268 Query: 118 -RNLALTAGQRCRVGIRCNDVRLQAGNSAGASVTLACTVGLAELSGSETYLHLR-HGGDA 175 L +T G +G+R +R G L V L E G +L++ GG Sbjct: 269 VDPLGVTPGAAVTLGLRAEQIR----EGLGDGQPLHGVVNLVEHLGEANFLYVTLDGGHD 324 Query: 176 LVAQLPGVHALEIGSAVQVNINAAQIFLFDTEGRLL 211 +V + G ++IG + +++++ LFD +G+ L Sbjct: 325 IVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQGQAL 360 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 650,589 Number of extensions: 25304 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 13 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)