BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0172.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [H... 638 0.0 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 209 2e-55 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 207 1e-54 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 204 1e-53 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 202 5e-53 >gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/362 (84%), Positives = 336/362 (92%) Query: 1 MARIEFRNLGHAYGPHPASPEDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MARIEF+NLGHAY +PAS +DYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLL Sbjct: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRARV 120 PSEGQVLFDG+DMT+M TR+RNIAQVFQFPVLYDTMSVFDNLAFPLRNRK+AE EV+ARV Sbjct: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 Query: 121 HEIAEILELTRDLKQRASGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWQLR 180 EIAE+L+LTRDLKQRA+GLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKW+LR Sbjct: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 Query: 181 QKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGKPEALFVRPDHTFVGYF 240 QKLK+IHHQLKLTLIYVTHDQVEALTFADEVVVMT GKVVQQGKPEALF+RPDHTFVGYF Sbjct: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 Query: 241 IGSPGMNFYPLQIDGDAVVIGQQRVDIDAAQLQALKHANGELKLGIRPEFVELTTAGAPG 300 IGSPGMNF P++++GDAV++GQQR+ I+AAQLQALK++NGELKLGIRPEFVEL GA G Sbjct: 241 IGSPGMNFCPVRLEGDAVLLGQQRLQIEAAQLQALKNSNGELKLGIRPEFVELAAPGATG 300 Query: 301 AVSANIVQIQHLGTSQLLTAEFGGQIVKARLDASARLSEGRQWLRLAKAETIFFSNDERI 360 AVSA I Q+QHLGTSQL+TA+F G VKARL +++ G QWLRLAK ETI+FSNDERI Sbjct: 301 AVSAEITQVQHLGTSQLVTAQFEGMSVKARLSPEMKIATGNQWLRLAKPETIYFSNDERI 360 Query: 361 GR 362 GR Sbjct: 361 GR 362 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 209 bits (533), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 197/356 (55%), Gaps = 19/356 (5%) Query: 1 MARIEFRNLGHAYGPHPASPEDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MA I + L Y P L P+++ DG LLGPSGCGKST+L +I+GL Sbjct: 1 MADIHCQALAKHYAGGPP-----VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLED 55 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRARV 120 S G + G + +P RERN+A VFQ LY MSV+DN+AF LR K +E+ RV Sbjct: 56 ISGGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRV 115 Query: 121 HEIAEILELTRDLKQRASGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWQLR 180 E+A +L L L+++ +S +Q+ ++ R ++ K + LFDEPL+ +D ++ QLR Sbjct: 116 REVAALLNLEALLERKPRAMSGGQQQRAAIARAII-KTPSVFLFDEPLSNLDAKLRAQLR 174 Query: 181 QKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGKPEALFVRPDHTFVGYF 240 +K++H +L+ T +YVTHDQ+EA+T AD V++M +G++VQ G P L+ P + F F Sbjct: 175 GDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGF 234 Query: 241 IGSPGMNFYPLQI---DGDAVV-IGQQRVDIDAAQLQALKHANGELKLGIRPEFVELTTA 296 IG+P MNF + DG + QR + + L+HA +KL +RP+ V + Sbjct: 235 IGTPAMNFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMA-VKLAVRPDHVRIAGE 293 Query: 297 GAPGA-----VSANIVQIQHLGTSQLLTAEFGGQIVKARLDASARLSEGRQWLRLA 347 P A VS +V+I LG LLT G Q + A + A RL + L LA Sbjct: 294 REPAASLTCPVSVELVEI--LGADALLTTRCGDQTLTALVPAD-RLPQPGATLTLA 346 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 207 bits (527), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 189/332 (56%), Gaps = 21/332 (6%) Query: 1 MARIEFRNLGHAYGPHPASPEDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MA + RNL Y ++ ++ +N+ EDG +GPSGCGKSTLL +I+GL Sbjct: 1 MAAVSIRNLAKRYD------DNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEE 54 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRARV 120 S+G + + M ++P +R +A VFQ LY MS++DN+AF L+ +++E+ A V Sbjct: 55 ISDGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAV 114 Query: 121 HEIAEILELTRDLKQRASGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWQLR 180 A+IL + L ++ LS +Q++++GR + R+ + LFDEPL+ +D ++ ++R Sbjct: 115 QHAAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQP-SVFLFDEPLSNLDAALRVKMR 173 Query: 181 QKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGKPEALFVRPDHTFVGYF 240 + ++H LK T+IYVTHDQ+EA+T AD++VV++ G++ Q G P+ L+ P + FV F Sbjct: 174 LEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGF 233 Query: 241 IGSPGMNFY-----PLQIDGDAVVI---GQQRVDIDAAQLQALKHANGELKLGIRPEFVE 292 IGSP MNF +Q DG V + G Q +D + LQ ++ LG+RPE Sbjct: 234 IGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQ----VGQKVTLGVRPE--H 287 Query: 293 LTTAGAPGAVSANIVQIQHLGTSQLLTAEFGG 324 L A A+ A ++ LG L A + G Sbjct: 288 LNIAQGQAALQARCTALELLGDFSYLYAAYEG 319 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 197/346 (56%), Gaps = 8/346 (2%) Query: 1 MARIEFRNLGHAYGPHPASPEDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MA I + + YG + + + ++ DG ++GPSGCGKSTLL +++GL Sbjct: 1 MAAIHLKQVRKTYGAGTKAVD--VIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEE 58 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRARV 120 S GQ++ + + + +ER+IA VFQ LY M+V+ N+A+ L+ + +++SE+ ARV Sbjct: 59 ISSGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARV 118 Query: 121 HEIAEILELTRDLKQRASGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWQLR 180 A ILEL L++ LS +Q++++GR +VRK A LFDEPL+ +D ++ Q+R Sbjct: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKP-AVFLFDEPLSNLDAKLRVQMR 177 Query: 181 QKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGKPEALFVRPDHTFVGYF 240 +++++H L+ T +YVTHDQVEA+T ++VM G Q G P ++ RP TFV F Sbjct: 178 LEIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASF 237 Query: 241 IGSPGMNFY--PLQIDGDAVVIGQQRVDIDAAQL-QALKHANGELK-LGIRPEFVELTTA 296 IGSP MN L DG + + + D +L Q L A G+ + LG+RPE + Sbjct: 238 IGSPPMNLLQGKLSADGASFEVSKGNAS-DILRLPQPLTGAAGQERILGVRPEHLLPILD 296 Query: 297 GAPGAVSANIVQIQHLGTSQLLTAEFGGQIVKARLDASARLSEGRQ 342 G+ +S + ++ LG L+ A GGQ + R A+ ++ G++ Sbjct: 297 GSAAQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQR 342 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 202 bits (513), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 188/341 (55%), Gaps = 17/341 (4%) Query: 1 MARIEFRNLGHAYGPHPASPEDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MA I + + +G E A++ ++ + G LLGPSGCGKST L +I+GL Sbjct: 1 MAAISLQGVCKHWG------EAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDK 54 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRARV 120 PS G + G+D+TQ+P +R I+ VFQ L+ +SV DN+ F +R RK + R+ Sbjct: 55 PSSGSIHIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRL 114 Query: 121 HEIAEILELTRDLKQRASGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWQLR 180 +A+IL L L++R + LS +Q+++LGR ++ D L DEPL+ +D ++ ++R Sbjct: 115 KRVADILGLAHLLERRPAQLSGGQQQRVALGRAII-ADAPVCLMDEPLSNLDAQLRQEMR 173 Query: 181 QKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGKPEALFVRPDHTFVGYF 240 ++++ + QL +T++YVTHDQ EA++ AD+V+++ G++ Q P L+ +P F F Sbjct: 174 REIRALQQQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARF 233 Query: 241 IGSPGMNFYPLQIDGDAVVI-GQQRVDIDAAQLQALKHANGELKLGIRPEFVELTTAGAP 299 IG+P MN PL+ + +VI G + D Q +LG+RPE + L A + Sbjct: 234 IGTPPMNLLPLEPHAEGLVISGSDVILRDLGQT--------PWQLGLRPEHIRLADA-SD 284 Query: 300 GAVSANIVQIQHLGTSQLLTAEFGGQIVKARLDASARLSEG 340 +V A + +++ G ++ A G + R RL G Sbjct: 285 SSVPAVVETVEYFGADTIIGARIGAASLLVRAPGQHRLGAG 325 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,164,553 Number of extensions: 49962 Number of successful extensions: 478 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 348 Number of HSP's successfully gapped: 128 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)