BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0164.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309533|ref|YP_003773625.1| diaminopimelate decarboxylase [...   352   9e-99
gi|300312040|ref|YP_003776132.1| diaminopimelate decarboxylase [...    67   2e-12

>gi|300309533|ref|YP_003773625.1| diaminopimelate decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  352 bits (904), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 182/204 (89%)

Query: 1   VIELIDQLEAEGIAIHHLDIGGGIGITYDDEQPVPVGDYLGRLFTRIDAWRKEKYAGRAI 60
           +I+++D LEAEGI IHHLDIGGGIGI YDDEQPV +GDYL R+F R+DAWR  KY GR I
Sbjct: 225 IIDMVDALEAEGIPIHHLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRASKYQGRPI 284

Query: 61  KVMFEPGRSIVGNAGVLVTEVQYLKHGESKNFAVVDAAMNDLMRPALYEAWHGVQVVQQR 120
           +VMFEPGRS+VGNAG+L+TEVQYLKHGE KNFAVVDAAMNDLMRPA+YEAWHGV+ V++ 
Sbjct: 285 QVMFEPGRSVVGNAGLLLTEVQYLKHGEGKNFAVVDAAMNDLMRPAMYEAWHGVKTVKEN 344

Query: 121 KDAARTYDVVGPVCESGDWLARSRELAIAPGDLLALMSAGAYGMTMASNYNTRGRAAEVL 180
               R YDVVGPVCESGDWLARSRELAI  GDLLALMSAGAYGMTMASNYNTRGRAAEVL
Sbjct: 345 AGQPRIYDVVGPVCESGDWLARSRELAIGEGDLLALMSAGAYGMTMASNYNTRGRAAEVL 404

Query: 181 VDGDQAHLIRKRENPADLFALESI 204
           VDG++AHLIR RENPADLFALE I
Sbjct: 405 VDGERAHLIRARENPADLFALEKI 428


>gi|300312040|ref|YP_003776132.1| diaminopimelate decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 23/197 (11%)

Query: 2   IELIDQLEAE-GIAIHHLDIGGGIGITY-DDEQPV---PVGDYLGRLFTRIDAWRKEKYA 56
            EL  QL  E G+++  L+IGGG GI Y   E+ +   P+G +L +   R+ A   +   
Sbjct: 228 FELALQLAGEAGLSLRVLNIGGGFGIPYFPGERALEIAPIGAHLAQWLPRLRALHPQ--- 284

Query: 57  GRAIKVMFEPGRSIVGNAGVLVTEVQYLKHGESKNFAVVDAAMNDLMRPA-----LYEAW 111
              ++V+ E GR +VG AG+ V+ V   K    + F VVD  ++  +  +     +    
Sbjct: 285 ---LRVVMEMGRYLVGEAGLYVSRVIDRKQSRGEVFLVVDGGLHHHLAASGNFGQVIRKN 341

Query: 112 HGVQVVQQRKD-----AARTYDVVGPVCESGDWLARSREL-AIAPGDLLALMSAGAYGMT 165
           + V +V Q+             VVGP+C   D LA    L A A GDL+ +  +GAYG++
Sbjct: 342 YPVTIVPQQPQRSGGGTTERVSVVGPLCTPLDVLAAQMLLPAAAVGDLVVVFQSGAYGLS 401

Query: 166 MASN-YNTRGRAAEVLV 181
            +   +      AEVLV
Sbjct: 402 ASPTAFLGHPAPAEVLV 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 613,196
Number of extensions: 23791
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)