BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0159.p
         (473 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309537|ref|YP_003773629.1| glucoamylase [Herbaspirillum se...   874   0.0  

>gi|300309537|ref|YP_003773629.1| glucoamylase [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/473 (87%), Positives = 442/473 (93%)

Query: 1   VLLRPRFDWGREVPEITRGSNHVRYVGSEMTLRLNTDAPISYLLDETAFVISRPFNFLLG 60
           V+LRP+FDWGRE P  TRGSNH+RYVG E TLRLNTDAPISY++ ETAFV+SRP+NF+LG
Sbjct: 123 VVLRPKFDWGREEPLQTRGSNHIRYVGQEQTLRLNTDAPISYIVGETAFVVSRPYNFILG 182

Query: 61  PDETLTGGIGDTARSFEQETITYWRNWSRSLATPLEWQAAVIRAAITLKMSVYEDTGAII 120
           PDETL GGI DTAR FEQET  YWRNWSR+LATPLEWQ AVIRAAITLK+SVYEDTGAII
Sbjct: 183 PDETLHGGINDTARDFEQETTAYWRNWSRALATPLEWQDAVIRAAITLKLSVYEDTGAII 242

Query: 121 AAMTTSVPEAPGSARNWDYRYCWLRDAFFVVRALNSISELGTMEDYLRWLTNVVVRSAGG 180
           AAMTTSVPEAPGS RNWDYRYCWLRDAFFVVRALNS+SELGTMEDYLRWLTNVVVRS GG
Sbjct: 243 AAMTTSVPEAPGSQRNWDYRYCWLRDAFFVVRALNSLSELGTMEDYLRWLTNVVVRSGGG 302

Query: 181 HVQPLYGIGLEEALPEQILDHLPGYRHHAPVRVGNQAYEHFQHDVYGNIILGAAQAFHDA 240
           HVQPLYGIGLEEALPEQILDHLPGY+HH PVRVGNQAYEHFQHDVYGNI+LGAAQAFHD 
Sbjct: 303 HVQPLYGIGLEEALPEQILDHLPGYQHHQPVRVGNQAYEHFQHDVYGNIVLGAAQAFHDM 362

Query: 241 RLHHRAGAEQFKHLEAVGERAFEMYDRPDAGMWELRTRSRIHTSSALMSWAACDRLGKIA 300
           RLHHRAGAE F+HLEAVGERA+E+Y +PDAGMWELRTRSRIHTSSALMSWAACDRL KIA
Sbjct: 363 RLHHRAGAEHFQHLEAVGERAYEVYSQPDAGMWELRTRSRIHTSSALMSWAACDRLAKIA 422

Query: 301 SRLELDERARYWHERAEMIGKRILTEAWNEERQTYAESFGGRDLDASVLLMVEVGLIAPT 360
           +R++L ERARYW +RA+ IG RILTEAWNE+RQ YAESFGGRDLDASVLLMVEVGLI+PT
Sbjct: 423 ARVDLPERARYWGDRAKEIGDRILTEAWNEQRQAYAESFGGRDLDASVLLMVEVGLISPT 482

Query: 361 DKRFIATVDTLEKYLCDGPYMRRYEAPDDFGRPETAFNICTFWRIDALARIGRKEQAREI 420
           D RFI+TV+ LEK LCDGPYMRRYEAPDDFGRPETAFNICTFWRIDALARIGRKEQAREI
Sbjct: 483 DPRFISTVEALEKSLCDGPYMRRYEAPDDFGRPETAFNICTFWRIDALARIGRKEQAREI 542

Query: 421 FEAMLAARNHVGLLSEDTHPVTGQMWGNFPQTYSMVGIINCAMRLSVSWETVI 473
           F+AML ARNH+GLLSEDTHPVT QMWGNFPQTYSMVGIINCAMRLS SWE VI
Sbjct: 543 FQAMLDARNHLGLLSEDTHPVTRQMWGNFPQTYSMVGIINCAMRLSASWEAVI 595


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,596,550
Number of extensions: 68941
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,198,455
Effective search space: 460206720
Effective search space used: 460206720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)