BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0158.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309538|ref|YP_003773630.1| alpha,alpha-trehalose-phosphate...   796   0.0  

>gi|300309538|ref|YP_003773630.1| alpha,alpha-trehalose-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 464

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/458 (84%), Positives = 421/458 (91%)

Query: 1   MSRLVVVSNRLADPRKPAAGGLAVALGETLKRTGGLWFGWSGKVVEDGTPGEGALHINQA 60
           M RLVVVSNRLADPRKPAAGGLAVALGETLK+TGGLWFGWSGKV+E+GTPGEG + +NQA
Sbjct: 1   MGRLVVVSNRLADPRKPAAGGLAVALGETLKKTGGLWFGWSGKVIENGTPGEGEVRVNQA 60

Query: 61  GPVTLAELDLCTEDHDAYYRGYANGVLWPVFHYRLDLAHFESGHLGGYRRVNQLFARKLM 120
           GPVTLAELDL  EDHDAYYRGYANGVLWPVFHYRLDLAHFE+GHLGGYRRVNQLFARKL 
Sbjct: 61  GPVTLAELDLSQEDHDAYYRGYANGVLWPVFHYRLDLAHFEAGHLGGYRRVNQLFARKLF 120

Query: 121 PLLKPDDLIWIHDYHLIPLAAELRAMGCGNRVGFFLHIPLPPPQILAAIPSHEWLMRALF 180
           PLLK DD++WIHDYHLIPLAAELRAMGC  R+GFFLHIPLPPP IL AIPSHEWLMRALF
Sbjct: 121 PLLKRDDIVWIHDYHLIPLAAELRAMGCEARIGFFLHIPLPPPPILTAIPSHEWLMRALF 180

Query: 181 AYDLVGFQTEADLQHFSNYVKAEATAETVGVSQFRAFNSTVQAKAFPIGIDVDDFQRLGR 240
           AYDLVGFQ  ADLQHF+ YV+AEATAE VG +QFRAFN TV A AFPIGIDV +FQRLG+
Sbjct: 181 AYDLVGFQNHADLQHFAQYVQAEATAEPVGPNQFRAFNRTVHANAFPIGIDVAEFQRLGQ 240

Query: 241 AREARETFENTRKEYSRRRLLIGVDRLDYSKGLPHRIRAFRELLQQYPENRHSATLLQVA 300
           A+EAR+T+E+T+ EYSRRRLLIGVDRLDYSKGLP RIRAFRELL+ YPENRHSATLLQ+A
Sbjct: 241 AKEARDTYESTKAEYSRRRLLIGVDRLDYSKGLPQRIRAFRELLRLYPENRHSATLLQIA 300

Query: 301 SPSREDVDAYADIQRELESLCGSINGDFGDFEWMPIRYMHRTVARKRLPGLYRACAVALV 360
           SPSREDV+AY DIQRELESLCGSINGDFGDF+WMPIRY+HRTVAR+RLPGLYRACAVALV
Sbjct: 301 SPSREDVEAYGDIQRELESLCGSINGDFGDFDWMPIRYIHRTVARRRLPGLYRACAVALV 360

Query: 361 TPLRDGMNLVAKEFVAAQDEEDPGVLVLSRFAGAAEQMKEALLVNPYDTHGTAQAIQHAL 420
           TPLRDGMNLVAKEFVAAQD +DPGVLVLSRFAGAAEQMK AL++NPYDTHGTAQ IQ AL
Sbjct: 361 TPLRDGMNLVAKEFVAAQDPDDPGVLVLSRFAGAAEQMKAALIINPYDTHGTAQVIQQAL 420

Query: 421 QMPLQERKERHAALLATIRKYDVHWWCNSFLETLTNVR 458
           QM   ER+ERHAAL+  IR++DVHWWC  FL+TL + R
Sbjct: 421 QMSQSERRERHAALMENIRQFDVHWWCREFLDTLRSSR 458


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,477,320
Number of extensions: 63374
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)