BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0155.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309540|ref|YP_003773632.1| transmembrane protein [Herbaspi...   301   5e-83
gi|300309539|ref|YP_003773631.1| hypothetical protein Hsero_0197...   147   1e-36

>gi|300309540|ref|YP_003773632.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  301 bits (771), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/182 (81%), Positives = 165/182 (90%), Gaps = 3/182 (1%)

Query: 152 MRKYFITGLLILVPLAITVWVLNLIIGTMDQSLLLLPESWRPEALVGFHIPGLGTILTLL 211
           MRKYFITGLLILVPLAIT+WVLNLII TMDQSLLLLPE+WRP   +G +IPGLG ILTLL
Sbjct: 1   MRKYFITGLLILVPLAITLWVLNLIISTMDQSLLLLPETWRPAHWLGHNIPGLGAILTLL 60

Query: 212 IIFITGLATRNFIGRQVVSLWEGLLTRIPVVKSIYSSVKQVSDTLFSSSGNAFRKAVLVQ 271
           I+F+TGLA RNFIGR++V LWEGLLTRIPVVKSIYSSVKQVSDTLFS SGNAFRKAVL+Q
Sbjct: 61  IVFLTGLAARNFIGRRLVLLWEGLLTRIPVVKSIYSSVKQVSDTLFSPSGNAFRKAVLIQ 120

Query: 272 YPRQGSWTIAFLTGIPGGEVKNHLAGDYVSLYVPTTPNPTSGFFLMVPK---IITDVAAD 328
           YPRQGSWTIAFLTG PGGEVKNHL G+++S+YVPTTPNPTSGFFLM+P+   I  D++ D
Sbjct: 121 YPRQGSWTIAFLTGAPGGEVKNHLPGEFISVYVPTTPNPTSGFFLMLPRADAIELDMSVD 180

Query: 329 AA 330
           AA
Sbjct: 181 AA 182


>gi|300309539|ref|YP_003773631.1| hypothetical protein Hsero_0197
          [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  147 bits (371), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 70/76 (92%)

Query: 1  MPIYAYRCEACGFAKDVLQKMSDDALTVCPSCGKDGFRKQLTAAGFQLKGSGWYVTDFRG 60
          MPIYAYRCEACGFAKDVLQK+SDDALTVCPSC KD FRKQLTAAGFQLKGSGWYVTDFRG
Sbjct: 1  MPIYAYRCEACGFAKDVLQKISDDALTVCPSCNKDSFRKQLTAAGFQLKGSGWYVTDFRG 60

Query: 61 NGSGVANSTGATGTAL 76
          NGSG ANS GA GT +
Sbjct: 61 NGSGTANSKGANGTGI 76


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 937,047
Number of extensions: 35444
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)