BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0152.p
         (103 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310527|ref|YP_003774619.1| transmembrane protein [Herbaspi...   134   1e-33
gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391...    86   5e-19

>gi|300310527|ref|YP_003774619.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  134 bits (338), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 81/103 (78%)

Query: 1   MREEKLRTVRSDVQVLLQEAQELFTEAAATTGKKAEDLRAKGEEILDRAFVKAQGIQSYV 60
           M+  K +TVR+DVQ LLQ+AQ++F EAA  TGKKA+DLRA  +E+L++A   AQ  Q+ V
Sbjct: 41  MQANKFKTVRTDVQSLLQQAQDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAV 100

Query: 61  VQTGKEIASTTDDYVQSNPWRAIAISTGVGLLLGLCVARTGER 103
           V TG++I +TTDDYVQSNPWRAIAI TG+GLL+GL V R  +R
Sbjct: 101 VDTGRQIVTTTDDYVQSNPWRAIAIGTGIGLLVGLAVGRCADR 143


>gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391
           [Herbaspirillum seropedicae SmR1]
          Length = 102

 Score = 85.9 bits (211), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 74/95 (77%)

Query: 6   LRTVRSDVQVLLQEAQELFTEAAATTGKKAEDLRAKGEEILDRAFVKAQGIQSYVVQTGK 65
           L+TVR+D++ L+++AQ LF EAAA TG+KA++LRA+G  +L+ A   AQ  Q+  ++ GK
Sbjct: 7   LKTVRNDMKTLVKDAQALFAEAAAATGEKADELRARGLTLLEAAAEAAQSAQAAAIEKGK 66

Query: 66  EIASTTDDYVQSNPWRAIAISTGVGLLLGLCVART 100
           E+A+ TDDYV  NPWRA+AIS G+GLL+GL + R+
Sbjct: 67  EVAAKTDDYVHENPWRAVAISAGLGLLVGLVIGRS 101


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 239,724
Number of extensions: 7112
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 32
Effective length of database: 1,283,685
Effective search space: 41077920
Effective search space used: 41077920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 123 (52.0 bits)