BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0146.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310533|ref|YP_003774625.1| CheY-like response regulator re...   183   5e-48

>gi|300310533|ref|YP_003774625.1| CheY-like response regulator
           receiver domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 169

 Score =  183 bits (465), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 111/146 (76%), Gaps = 6/146 (4%)

Query: 18  APLKIFLVEDSEDVRDLIIESLTEIPGVVLAGYSETEQDAMARLENESYDVLILDIQLKQ 77
            PL+IFLVEDSEDVRDLI+ESL EI GV L GY+ETE DA+  L+  SYDVLILDIQLKQ
Sbjct: 21  TPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDIQLKQ 80

Query: 78  GNGMHLLQSLALAGKRRHDELKIVFSNHVSSTYRRVGVQYGVQFFFDKSSEFTKLRSLIE 137
           GNGM LLQ+LA +  RR  E+K+VFSNHVS TYRRVGVQ GVQ FFDKSSE   L  L+E
Sbjct: 81  GNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLLCDLLE 140

Query: 138 RISGR--GAAGK----NNSPRGFAPA 157
            ++ +  G AG+    NNSP+G A A
Sbjct: 141 ELAQQRAGKAGRTSSSNNSPQGPAQA 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 456,931
Number of extensions: 16995
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)