BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0135.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310540|ref|YP_003774632.1| nitrate transporter periplasmic...   755   0.0  

>gi|300310540|ref|YP_003774632.1| nitrate transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/410 (88%), Positives = 383/410 (93%), Gaps = 3/410 (0%)

Query: 16  EVDFKRRQLIQTAGLA-TGASMLGLATGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMAS 74
           +VD KRR LIQ AGLA TGA  LGLA  GAWAAGSDKPEKEEVKIGFIPLTDCASVVMAS
Sbjct: 6   QVDGKRRTLIQGAGLAATGA--LGLAGRGAWAAGSDKPEKEEVKIGFIPLTDCASVVMAS 63

Query: 75  VLGFDKKYGIKIVLSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQMGIGGQKKDMAVLM 134
           VLG DKKYGIKI+ SKEASWAGVRDKLTNGELDAAHVLYGLIYGVQ+GIGGQKKDMAVLM
Sbjct: 64  VLGLDKKYGIKIIPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVLM 123

Query: 135 SLNNNGQAITLSKKIADKGGVDGASLAKLMQTDKREYTFAQTFPTGTHAMWLYYWLAANG 194
            LN+NGQAITLS+K+ADKG VDGASL KLMQTDKREYTFAQTFPTGTHAMWLYYWLAANG
Sbjct: 124 GLNHNGQAITLSRKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAANG 183

Query: 195 INPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDHPE 254
           INPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDHPE
Sbjct: 184 INPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDHPE 243

Query: 255 KVLGTTLDFARKYPNTCRAMMAAILEASKWIDASLANKNKMAEVIADKSYVNTSKDVIDQ 314
           KVLG++L+F +KYPNTCRAMMAAILEASKWIDASL NKN+MAEVIADKSYVNTSKDVIDQ
Sbjct: 244 KVLGSSLEFVKKYPNTCRAMMAAILEASKWIDASLTNKNRMAEVIADKSYVNTSKDVIDQ 303

Query: 315 RIMGRYQNGLGKTWDDPNYMKFYNDGAVNFPYLSDGMWFMTQHRRWGLLKEDPDYQAVAK 374
           RI+GRYQNGLGKTWDDPNYMKFY DG VNFP+LSDGMWFMTQHRRWGLLK DPDY AVAK
Sbjct: 304 RILGRYQNGLGKTWDDPNYMKFYEDGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVAK 363

Query: 375 SVNQIDLFKDAATMTKTSIPKDVMRTSKLMDGTVWDGKNPKAYAASFKVK 424
           +VNQIDL+K AA MT T +PKD MR+S+LMDG VWDGKNP AYA SFK+K
Sbjct: 364 AVNQIDLYKQAAAMTGTPLPKDSMRSSRLMDGVVWDGKNPAAYAQSFKIK 413


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,266,638
Number of extensions: 50218
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)