BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0132.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310543|ref|YP_003774635.1| methyl-accepting chemotaxis pro...   319   1e-88

>gi|300310543|ref|YP_003774635.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  319 bits (818), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/207 (75%), Positives = 179/207 (86%)

Query: 24  PLSGEVFGALINLSGRRRFTSQRLVLYAVLASQGHDGAVKTAREALALFRGAHTALVRGS 83
           PLSGEVFGALINLSGRRRFTSQRLVLYAVLA+QG  GA  TAREALALFR AH+AL++ S
Sbjct: 22  PLSGEVFGALINLSGRRRFTSQRLVLYAVLAAQGQAGACSTAREALALFRSAHSALLKRS 81

Query: 84  DTVPGIFCEEVREAYFGKLAGDAQIVYFMNLAERTLNAIEDRLRDAPALLEELVRITTPL 143
             +PG+FC E+ E YFG+  GDA+I  F  LA+RTLNAIEDRL+ AP LL ELV+ TTPL
Sbjct: 82  GDLPGVFCPELEEVYFGRRGGDARITAFAELAQRTLNAIEDRLKSAPTLLAELVQETTPL 141

Query: 144 LGVLNQITTVYEEQSKRHAVLMKKQLRGIMTDIETIAKQAKMVSFNARIVAARAGQAGKE 203
           L VLN+IT VYE QSK+HA LM+ QLRGIMTDIETIA++AKMV+FNARIVAAR+GQAGKE
Sbjct: 142 LAVLNEITAVYEAQSKKHAQLMRHQLRGIMTDIETIAREAKMVAFNARIVAARSGQAGKE 201

Query: 204 FSVVAGVLSNITTEIDDLVRAALSGAA 230
           FSVVAGVLS+IT EID+LV+ ALSGAA
Sbjct: 202 FSVVAGVLSSITGEIDELVKQALSGAA 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 661,582
Number of extensions: 26045
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)