BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0123.p
         (332 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309450|ref|YP_003773542.1| hemin transport protein [Herbas...   130   1e-31

>gi|300309450|ref|YP_003773542.1| hemin transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 16/314 (5%)

Query: 25  RATRLNGD---FAPLMQRLAALGNLTEVTRNPSALLEKDNVSGALYVNNEIELAPAEAM- 80
           +ATRL  D      L +RLA LG +  V RN   +LE+         + +  + P   + 
Sbjct: 69  QATRLTSDARDLQALYERLAELGRIKAVIRNDDVMLERTGAVTPARRDEQGRVVPGTGLA 128

Query: 81  ----HLRIFYPQWEHGYALEEHDACNGGKQHSLQFFDRYGNMMHKIVLGENGDIASFRQL 136
                LRI   QW   +A+ +    +G    SLQFFD++G  +HKI L  +  IA++ +L
Sbjct: 129 GGPIDLRIGGVQWGSAFAVAQ-PGRDGKALRSLQFFDQHGQAIHKIYLDNDEHIAAYERL 187

Query: 137 VRDHAAAEQLAPHLIHPRES----DTEGNDDSLDRIDVDALRADWAHTHNHDDFVQRQEA 192
           V +   A Q AP +  P  +    D  G   +    DV  LR  W    +   F +    
Sbjct: 188 VAEFRIAGQPAPLIALPAPTQPPADVRGTASA---ADVAQLRQAWTKLTDVHQFPRLLRE 244

Query: 193 FDQQRLRKLRLAGKAFAYQVANDSARVILQRMTEFGTSIMAQVGNAGIVQAYYGKIKNIR 252
               R + L+L G   A++++    ++++         IMA V   G+ Q Y G I    
Sbjct: 245 LKLSREQALQLIGDDSAWRISAQGLQLLMDDARARRQPIMAFVSQGGMTQIYSGMIDRSS 304

Query: 253 VKDSRLKIMNAGFRMQLREDHIDSIWVAKKPTTDGIITSLELFNRQGTHIASFLSKKSNG 312
              +  +++   FR+++R   ID  WV ++PT  G++TS+E ++  G  + +F S++  G
Sbjct: 305 NSGAWYEVLGEDFRLKVRSATIDHGWVVRRPTDHGMVTSVEFYDAAGRQLVNFFSRRDRG 364

Query: 313 QPEPREWREAIMRL 326
           QPE  +WR  +  L
Sbjct: 365 QPETAQWRRMVEAL 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,089,147
Number of extensions: 45501
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,212,660
Effective search space: 298314360
Effective search space used: 298314360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)