BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0121.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase [Herb...    66   3e-12

>gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 27/249 (10%)

Query: 2   LTPAQIEQYRTDGLLVVPGLLDVFTLQRMKEALAQWLEQSRA-VNTHTQV--------FD 52
           L+  Q+  +R  G L++ G++     +RM       L+++ A +    +V         +
Sbjct: 5   LSSTQVAFFREQGYLLLKGMVPADLRERMLAVTRDHLQRAVAPLEYEAEVGYEGAPASLE 64

Query: 53  LENGHSADDPRLRRIKQPHKHHPVFEEFIRSQPVVAVLRDLLGEGLRLQSSKLNL---KS 109
            E G +A     RR++   +  PV+ E+  S+ +VA+L  L  E + +  +  N    K 
Sbjct: 65  AEGGRTA-----RRLRAAWQRDPVYREWAGSRALVAILHQLFDEPVCITLAHHNCVMTKH 119

Query: 110 PRFGSPVEWHQDWAFYPHTNDDILAVGVMLDDTSLENGAMLVVPGSHTGPTYDHHADGRF 169
           P FG+   WH+D  ++    +++++V + L   + ENGA+  +PGSH         D   
Sbjct: 120 PAFGTATGWHRDIRYWSFPRNELISVWLALGAETPENGALKFIPGSHKLKLQPEQMD--- 176

Query: 170 CGAIDPATPGLNLDRAVPVTGKA-----GSVSFHHVRAVHGSAQNRSTMSRNFLLYEVCA 224
              +D   P +  ++A+   G A     G V   H    H + +N S   +   ++    
Sbjct: 177 --ELDFLRPDVAANQALFAQGIALSLEPGDVVLFHSGLFHAAGRNDSDQVKCSAVFAYHG 234

Query: 225 ADAFPLLGV 233
           A   PL G 
Sbjct: 235 ASNPPLAGT 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 967,822
Number of extensions: 41533
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)