BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0117.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310548|ref|YP_003774640.1| Tol-Pal cell envelope complex s...   365   e-102

>gi|300310548|ref|YP_003774640.1| Tol-Pal cell envelope complex
           subunit YbgF protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  365 bits (936), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/230 (76%), Positives = 203/230 (88%)

Query: 10  LPATAHAGLFDDDEARKAILDIRNKIDALQKDVANKTDKTSALSLSDQNDQLRQEIARLR 69
           LP TA AGLFDDDEARKAILDIR+KI+ALQ+DVANK DK S L+LSD+ND L+ +IA LR
Sbjct: 22  LPLTARAGLFDDDEARKAILDIRSKIEALQRDVANKADKNSVLTLSDRNDNLQSQIAALR 81

Query: 70  GQVEVLSNELANTQQRQKDFYVDLDARVRKLEPQKVTIDGKESSVDLNEQKTYDAALNLF 129
           GQ+EVL+NE+ N QQRQKDFYVDLDAR+RKLEPQ+V +DG+  +V ++EQ+ YDAAL+ F
Sbjct: 82  GQIEVLTNEITNAQQRQKDFYVDLDARLRKLEPQQVQVDGQTVAVGVSEQQAYDAALSQF 141

Query: 130 KGGDYKGAGAAFSDFLKRYPQSGYAPSAQYWVGNSLYAQRDYKGAIAAQQVVVKNYPDSP 189
           KGGDYKGA  AF+DFLKRYPQSGYAPSAQYW GNSLYAQRDYKGAIAAQQVVVKNYPD+P
Sbjct: 142 KGGDYKGAANAFADFLKRYPQSGYAPSAQYWQGNSLYAQRDYKGAIAAQQVVVKNYPDNP 201

Query: 190 KVADAMLNIGSSYVELKDKAAAKKAWDALIAKYPESPAAQTGKEKLATLK 239
           K ADA+LNI SS  ELKDKAAAKK  + LIAKYP +PAAQTGKE++A+LK
Sbjct: 202 KAADALLNIASSQAELKDKAAAKKTLEQLIAKYPNTPAAQTGKERMASLK 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 643,445
Number of extensions: 24312
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)