BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0115.p
         (442 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310549|ref|YP_003774641.1| periplasmic component of the To...   723   0.0  

>gi|300310549|ref|YP_003774641.1| periplasmic component of the Tol
           biopolymer transport system protein [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/410 (84%), Positives = 383/410 (93%)

Query: 33  GIAAASAAHAELRFEISGVGASQIPVAIAAFPGEEGAPQQITSIVKADLARSGVFKLIDN 92
           G++ A A+ A++RFEI+GVGASQIP+AI AFPGEE APQQITS+VKADLARSGVFKLIDN
Sbjct: 19  GLSFAPASQAQIRFEITGVGASQIPIAITAFPGEESAPQQITSVVKADLARSGVFKLIDN 78

Query: 93  SDSLSDASAINYGDWKNRGANALAVGSVQRLADGRFDVRYRLFDTIKAAQLSALSFGSQP 152
            D+LSD+SA+NY DW+ RGANALAVGSV RLADGRFDVRYRLFDT++++QLSALS G+QP
Sbjct: 79  GDALSDSSAVNYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSIGAQP 138

Query: 153 QLMRLTAHKIADDIYEKLTGIPGIFSTRIAYVTRSGKEYRLEVADADGEGVQVALRSNEP 212
           QL+RLTAHKIADDIY+KLTGIPGIFSTRI+YVT+SG EYRLEVADADGEG QVALRSNEP
Sbjct: 139 QLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGGEYRLEVADADGEGTQVALRSNEP 198

Query: 213 IISPSWSPDGGKVAYVSFEAKKPVIYIQNLVTRQRTLVANFKGSNSAPAWAPDGQRLAVA 272
           IISPSWSPDG KVAYVSFE KKPV+YIQNLVTRQR++VANFKGSNSAPAW+PDG RLAVA
Sbjct: 199 IISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVA 258

Query: 273 LTRDGLTQVYVINADGSGLRRLTNTAGIDTEPRFSPDGNYVYFTSDRSGGPQIYKVSPNG 332
           LTRDGLTQVYVINADGSGLRRLTN+AGIDTEP+FSPDG  +YFTSDRSGGPQ+YKV  +G
Sbjct: 259 LTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQVYKVGLDG 318

Query: 333 GDAQRVTFGGSYNISPRISPDGKTLAFISRREGKFQLYALDLTNGQEQRLSDTVKDESPS 392
           G  QRVTF GSYNISPRISPDGKTLAFISRR+G+FQLYALDLTNGQE RLSD  +D+SPS
Sbjct: 319 GSPQRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLYALDLTNGQEIRLSDGSRDQSPS 378

Query: 393 FSPNGKYIMYATESGRRGSLAIVSTDGRIKQRLTTQVGDIREPTWGPFMK 442
           F+PNGKYIMYATE+GRRGSLA+VS DGRIKQRLTTQ GDIREPTWGPFMK
Sbjct: 379 FAPNGKYIMYATEAGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,464,821
Number of extensions: 66027
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,203,190
Effective search space: 425929260
Effective search space used: 425929260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)