BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0107.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310556|ref|YP_003774648.1| transcription regulator protein...   258   1e-70

>gi|300310556|ref|YP_003774648.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  258 bits (660), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 138/147 (93%), Gaps = 1/147 (0%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           LDTR+SE+G +IRRRRRC NCDKRFTTYERIELT+PVIVKKNGSR+EFDP+KLR SLMLA
Sbjct: 14  LDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTLPVIVKKNGSRTEFDPAKLRGSLMLA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           LRKRPVSAEAVD AIQSIQ+KLL SG REV+SGQ+GELVMRELKRLDKIAYIRFASVYKS
Sbjct: 74  LRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQIGELVMRELKRLDKIAYIRFASVYKS 133

Query: 121 FEDVTEFQDAIAEVGQERKAAAKKRND 147
           FEDV EFQDAIAEVGQERK  AK+R+D
Sbjct: 134 FEDVAEFQDAIAEVGQERK-GAKRRDD 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 348,518
Number of extensions: 11333
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)