BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0105.p
         (103 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310557|ref|YP_003774649.1| hypothetical protein Hsero_1225...   138   1e-34

>gi|300310557|ref|YP_003774649.1| hypothetical protein Hsero_1225
           [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score =  138 bits (347), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 83/103 (80%), Gaps = 1/103 (0%)

Query: 1   MQLNVSIMGHAYTLVCKEDEEATLRQAVAYLDEKMCAIRDAGKIKGNDRIAVMAALGIAA 60
           +Q+   IMG +YTL C+E E+A L  AVAYLD+KM AIRDAG+IKG DRIAVMA LGIAA
Sbjct: 4   IQIQAMIMGQSYTLACQEGEQAALHHAVAYLDQKMRAIRDAGRIKGTDRIAVMAGLGIAA 63

Query: 61  ELLSIQPGGDGSFAGLTVAEWKQSIASMHSVLDDALAPQEKLF 103
           ELLS+Q   +G FAG+T+A+W+Q IA++  V+D ALAPQEKLF
Sbjct: 64  ELLSMQR-NEGPFAGMTLAQWQQQIATITEVVDQALAPQEKLF 105


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 317,865
Number of extensions: 11828
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 32
Effective length of database: 1,283,685
Effective search space: 41077920
Effective search space used: 41077920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)