BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0100.p (1244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699... 809 0.0 >gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699 [Herbaspirillum seropedicae SmR1] Length = 1124 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/639 (62%), Positives = 495/639 (77%), Gaps = 15/639 (2%) Query: 619 NGNISYEDSSV-------TP----TQKLRIEGLDLKADNLSSQLDQTSKLSLQATLNKN- 666 +G++ +DS+V TP TQ + +E L L+ N++ DQ L+LQA L+KN Sbjct: 487 DGHLKLDDSTVELASLQLTPEGKSTQPISVESLKLRVQNVTDTFDQAMPLTLQARLDKNG 546 Query: 667 VGPXKPQAAPQLKTVDLALDAQNLPIAPFQSYFTDYLNVTLTSGTLSTKGKLALTPPINK 726 Q AP LK DL LD + LPIAP Q YFTD LNV++++G LS KGKLALT P+ + Sbjct: 547 SADITGQIAPHLKNADLDLDLRELPIAPVQGYFTDILNVSISNGALSAKGKLALTLPLQQ 606 Query: 727 QTLALQYNGSASLNNFRVLDKLTSSDFLRWRTLNLQGVNAKIGGKPLVTLDKIALSDFYA 786 Q AL Y G+A++ N R+ DKLTS+DFLRWRTL L G+NAK+GG+ + LDK+ L+ FYA Sbjct: 607 QKFALDYKGNAAIANLRMQDKLTSTDFLRWRTLTLAGINAKLGGRAQIALDKVTLNSFYA 666 Query: 787 RAILSDQGKLNLQDIVVSKETPPSSVTAAETSADKPSTT-VAKTTTSTAPVTPAAPDPNA 845 RAILS++G+LNLQDI+V+ P S+T DK + ++ + S+ PVT A +A Sbjct: 667 RAILSEKGRLNLQDILVADGQPQGSITDDSKKDDKENRRDSSRKSVSSTPVTSPAARADA 726 Query: 846 PVIRIGQTVLQSGNINFTDNFVKPNYTVNMTGMGGTIGSIASDKPQPATIDLRGKVDNDA 905 P++R+GQ VL+ GNIN+TDNFVKPNYT NMTG+ G+IG I+S+KPQPA +++ GK+DNDA Sbjct: 727 PIVRVGQVVLEGGNINYTDNFVKPNYTANMTGLAGSIGEISSEKPQPAPVNISGKIDNDA 786 Query: 906 PLQISGTLNPLFKPMFLDIKASANGVQLPRLTPYSAKYAGYPITKGKLSMDVQYKIENDK 965 PLQISG LNPLFKPM+LD+KASANGVQLPRLTPYSAKYAGYPITKGKLSMDVQYKIENDK Sbjct: 787 PLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKYAGYPITKGKLSMDVQYKIENDK 846 Query: 966 LVAQNDVRIEQLTFGDHVDGPNVTKLPVMLAVSLLKDRDGTINLNLPISGSLSDPQFSIG 1025 LVAQND+RIEQLTFG+ VD PN T LPVMLAVSLLKDR+G INLNLPISGSLSDP+FS+G Sbjct: 847 LVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDRNGNINLNLPISGSLSDPEFSVG 906 Query: 1026 GIIMRVFVNLVVKAVTSPFALISSMFGSGGE-AELNYIEFEPGSSEITADIRKKLDTLGY 1084 GII+RVFVNL+ KAVTSPFALI SMF S EL YIEF GS+EI A++RKKLD LGY Sbjct: 907 GIIVRVFVNLIAKAVTSPFALIGSMFRSDENIGELRYIEFPAGSAEIDAEVRKKLDALGY 966 Query: 1085 ALHQRPALKIDVMGRADPAVDDAGLRQEVLNRKMRALKRKDVIEKEGQPTGKDNSLSDAD 1144 LH+RP +K+D+MGR DP VDD GLR+E L R+MR KR ++I +EGQP+G L+D + Sbjct: 967 VLHERPGIKLDIMGRVDPQVDDQGLRKEALERQMRGYKRAELIAREGQPSGP-VRLTDVE 1025 Query: 1145 RAKYMEKVYKDEKFKKPRNMVGLAKSLPPEEMQKLIVDNTPVTEDDLRNLAQRRADVVRN 1204 R+KY+E+ YK+ KF KPRNM+GLA+SLPP EM+KLI+++T V+ DDLR+LAQRRAD VRN Sbjct: 1026 RSKYLERAYKEAKFDKPRNMIGLARSLPPAEMEKLILEHTQVSPDDLRSLAQRRADQVRN 1085 Query: 1205 YLQDQSIISADRIFLIAPKLTAEGIKDKGQGSRVDLSLQ 1243 YLQ+QS+I RIFLIAPKL GI DK +RVDL++Q Sbjct: 1086 YLQEQSVIEPARIFLIAPKLDGAGIPDKEPKARVDLTIQ 1124 Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust. Identities = 265/516 (51%), Positives = 358/516 (69%), Gaps = 19/516 (3%) Query: 6 RPTWQL--RTLRWSAYTIAFLLLLALISWLALPSLVKKIAIEQTQEKIGRKLDIGELSFN 63 +P WQ R L+W A+ +A LL LA +SW ALP+LV+K+A+EQTQ ++GRKLD+G +SFN Sbjct: 12 QPAWQRLRRPLKWLAWMLAVLLALAALSWAALPALVRKLAVEQTQAQLGRKLDVGAVSFN 71 Query: 64 PFVLALRVHDVTLYEPDQKTAAFSAKELVVNASSTSALRLAAILDEIQLVEPKVHIVRLS 123 PF LAL+V D+TLYE D KT + + L+V+ASS S L LA +LDE++L +P++ + R+ Sbjct: 72 PFRLALQVSDITLYEADGKTPFLAVQSLLVDASSASLLCLAPVLDEVRLSKPQLRVQRID 131 Query: 124 DEGIGRYNFSDIIDRVLATPKSEGQTLFSLANVQLQNGAILFDDKVSGKTIDIRALNIGV 183 + G YNFSDI++R+ A PKSEGQ FSLANVQLQ+GAI F+DK++GKTIDI AL +G+ Sbjct: 132 ADQGGHYNFSDILERLAAQPKSEGQARFSLANVQLQDGAIHFEDKLTGKTIDIAALQVGL 191 Query: 184 PFVSNLPRNVDTFVQPVLSMTVNGTPFSLKGRSKPFASSLDTTLAIDIDKLDVASYLPFS 243 PF+SNLP N+D+FVQP LS T+NGTP LKGRSKPF+S+L++ AIDI++LD+ SYLPF Sbjct: 192 PFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFSSTLESAFAIDIERLDLVSYLPFV 251 Query: 244 PVALPVKLDSAKLSTRLDLTFSRDKDKPQIGLDGDLTLADISVQEKNAAPLIKIGSLSAK 303 P+ LPV L S LSTRLDL F+R +DKP I L GD+ L DI+V ++ APL+K L+ K Sbjct: 252 PMELPVLLQSGHLSTRLDLGFNRQQDKPTITLAGDVVLDDIAVADRAKAPLLKARQLAVK 311 Query: 304 IDKLDLLKLSGVIDQIAIDKPQIWADMNARGEINWTRIGKSDARAKSAASAKKPATATAT 363 + + D+L SG I Q+ +++PQIWA MN RGEINW R A A Sbjct: 312 LGQFDVLAASGQISQVTLEQPQIWASMNGRGEINWVR-----------------ALAAPA 354 Query: 364 TTPATETKTEAKDAAAPAITIRKLLVRDGSVQWTDDANASPRQTVHLDKITVDAEEVSTL 423 T T A A A AI +++L VRDG V W D+ANASP Q V L I +DA ++ST Sbjct: 355 TGKRTAASQAATSAQASAIVLQQLNVRDGRVNWRDEANASPAQNVQLSGIEIDAAQLSTA 414 Query: 424 ADTKPARLALSLTENGKGEIGFTGALAPLKGEVNGTATLKTVQLSGYQNYLNRSLNGALS 483 A+ +PA L ++ ENG G +GF G +APLK V G TL + L+GY+NYL+R+ L+ Sbjct: 415 ANAQPATLKVTAIENGHGRLGFEGQVAPLKPAVAGKLTLAGIDLAGYRNYLHRAPVSGLA 474 Query: 484 GQVSGSTEVQVAGSQVKLGKLGVEIADLKLSPKTKS 519 G++SG++ +Q +KL VE+A L+L+P+ KS Sbjct: 475 GKLSGNSTLQWRDGHLKLDDSTVELASLQLTPEGKS 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,452,076 Number of extensions: 139382 Number of successful extensions: 391 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 382 Number of HSP's successfully gapped: 3 Length of query: 1244 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1148 Effective length of database: 1,165,310 Effective search space: 1337775880 Effective search space used: 1337775880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 136 (57.0 bits)