BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0099.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...   332   2e-92
gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...    91   1e-19

>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  332 bits (851), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/217 (76%), Positives = 187/217 (86%)

Query: 43  MPLKIPRAILFDLDGTLADTAPDLAEAVNQLRAERGLEPTPYEQLRPVASAGARGLIGAA 102
           MPL+ PRAILFDLDGTLADTAPDLA A N LR +RGLE  PYEQLRPVASAGARGLIGAA
Sbjct: 1   MPLRPPRAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAA 60

Query: 103 FGIKPDDAEYEDLRVRFLNNYEAKLVVKSKLFDGVSDLLKQLEARGLAWGIVTNKASRFT 162
            GI+P + EYE+LRVRFL+ Y+A +   S+LFDG+ +LL QLEARG+AWGIVTNKA+RFT
Sbjct: 61  LGIRPGEDEYEELRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFT 120

Query: 163 DPLVPQIGLGHAGCVVSGDTTPHTKPHPAPLYEAANRLQLAADECWYVGDDLRDIQAGRA 222
           D L PQIGLGHAGC+VSGDTTPH+KPHPAPL EAA RLQL  ++CWYVGDDLRDIQAG+A
Sbjct: 121 DVLAPQIGLGHAGCIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKA 180

Query: 223 AGMQTIAAAWGYCGHVAPASWEADALLHDPMQLLELI 259
           A M TIAAAWGYCGH  PA WEADALLH P+Q+L L+
Sbjct: 181 AAMPTIAAAWGYCGHTEPAGWEADALLHAPLQILTLL 217


>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 88/191 (46%), Gaps = 5/191 (2%)

Query: 49  RAILFDLDGTLADTAPDLAEAVNQLRAERGLEPTPYEQLRPVASAGARGLIGAAFGIKPD 108
           +A + DLDGT+ DTA D   AVN++R + GL P   E +      G   LI     +   
Sbjct: 8   KAAIIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFVGKGTENLIRRVLAVDYA 67

Query: 109 DAE----YEDLRVRFLNNYEAKLVVKSKLFDGVSDLLKQLEARGLAWGIVTNKASRFTDP 164
           + E    ++        +Y A     S L+ GV + L+ L  +GL    VTNK   F  P
Sbjct: 68  EDEAAQYFQQALAACTEHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLAFAVP 127

Query: 165 LVPQIGL-GHAGCVVSGDTTPHTKPHPAPLYEAANRLQLAADECWYVGDDLRDIQAGRAA 223
           L+ + GL      V  GD+ P  KP P PL +      LA  +   +GD   D QA RAA
Sbjct: 128 LLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSNDAQAARAA 187

Query: 224 GMQTIAAAWGY 234
           G + +   +GY
Sbjct: 188 GCRVLNVPYGY 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 896,492
Number of extensions: 38926
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)