BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0097.p (206 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp... 307 3e-85 gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri... 87 8e-19 gi|300310091|ref|YP_003774183.1| outer membrane protein and rela... 87 9e-19 gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser... 86 3e-18 gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum se... 55 4e-09 >gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 307 bits (787), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 180/204 (88%), Positives = 187/204 (91%), Gaps = 2/204 (0%) Query: 1 MNKLAKLVFAAASAAIALSATAQEIKDIKVRPNSLYLQDSRDVVTRSGFGLCWQTAFVNG 60 MNKLAKLVFAAASAAIALSATAQE KDIKVRPNSLYLQD RDVVTRSG+GLCWQTA+VNG Sbjct: 1 MNKLAKLVFAAASAAIALSATAQETKDIKVRPNSLYLQDGRDVVTRSGYGLCWQTAYVNG 60 Query: 61 PCEEAPAQAAAPAAASAAPAAAAAAAPTSEKVTYAADAFFDFDKAVLKPAGKSKLDELVA 120 P A AP AA+A A AAAAAPTSEKVTYAADAFFDFDKA LKPAGK+KLDELV Sbjct: 61 P--CEEPPAPAPVAAAAPAAPAAAAAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELVG 118 Query: 121 NLKGLNLEVIIAVGHTDSVGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQP 180 NLK +NLEVIIAVGHTDS+GSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQP Sbjct: 119 NLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQP 178 Query: 181 VADNKSAAGRAKNRRVEIEVVGTR 204 VADNK+AAGRAKNRRVEIEVVGTR Sbjct: 179 VADNKTAAGRAKNRRVEIEVVGTR 202 >gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 87.4 bits (215), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 63/110 (57%) Query: 91 KVTYAADAFFDFDKAVLKPAGKSKLDELVANLKGLNLEVIIAVGHTDSVGSVAYNQKLSV 150 K+ +D FD +A +KP + LD A L + VGHTD+ GS A N LS+ Sbjct: 103 KLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSL 162 Query: 151 RRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKSAAGRAKNRRVEIEV 200 +RA + YL S+GV ANR +G+G +P+ N S A RA+NRRVEI V Sbjct: 163 QRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFV 212 >gi|300310091|ref|YP_003774183.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Herbaspirillum seropedicae SmR1] Length = 271 Score = 87.0 bits (214), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 6/104 (5%) Query: 100 FDFDKAVLKPAGKSKLDELVAN---LKGLNLEVIIAVGHTDSVGSVAYNQKLSVRRAESV 156 F+ +A L P GK LDE+ A LKG ++E+I G+TD+ G A N LS+ RA++V Sbjct: 169 FESGQATLTPEGKRILDEIAATMLKLKGRHVEII---GNTDNEGLRASNISLSLARADAV 225 Query: 157 KAYLVSKGVEANRVYTEGKGKSQPVADNKSAAGRAKNRRVEIEV 200 KAYL +KGV+ + + T G+G +PVA N +A GRAKNRR+E + Sbjct: 226 KAYLGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEFRI 269 >gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 6/104 (5%) Query: 100 FDFDKAVLKPAGKSKLDELVAN---LKGLNLEVIIAVGHTDSVGSVAYNQKLSVRRAESV 156 F+ +A L P GK LDE+ A LKG +E+I G+TD+ G A N LS+ RA++V Sbjct: 165 FESGRATLTPEGKRILDEIAATMLQLKGRRVEII---GNTDNEGLRASNISLSLARADAV 221 Query: 157 KAYLVSKGVEANRVYTEGKGKSQPVADNKSAAGRAKNRRVEIEV 200 KAYL +KGV+ + + T G+G +PVA N ++ GRA+NRR+E + Sbjct: 222 KAYLSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIEFRI 265 >gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 55.1 bits (131), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 48/104 (46%) Query: 97 DAFFDFDKAVLKPAGKSKLDELVANLKGLNLEVIIAVGHTDSVGSVAYNQKLSVRRAESV 156 D F+ L PA + L + +A +K + GH D++GS N LS+RRA + Sbjct: 86 DLLFELGTDRLTPASQDALKKAIAEIKDFPAGEFVLTGHADNIGSETNNDALSLRRARLI 145 Query: 157 KAYLVSKGVEANRVYTEGKGKSQPVADNKSAAGRAKNRRVEIEV 200 + L V+A + GKG P K +NR VEI++ Sbjct: 146 ERELRRADVKALSIEVIGKGARDPRVPQKRGVAEPRNRFVEIKI 189 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 395,244 Number of extensions: 11101 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 5 Length of query: 206 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 125 Effective length of database: 1,236,335 Effective search space: 154541875 Effective search space used: 154541875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)