BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0092.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312988|ref|YP_003777080.1| phosphoserine aminotransferase ...   652   0.0  

>gi|300312988|ref|YP_003777080.1| phosphoserine aminotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/369 (84%), Positives = 333/369 (90%), Gaps = 4/369 (1%)

Query: 1   MVYNFSAGPAVLPKEVLQQAADEMLDWHGSGMSVMEMSHRGKEYMSIIETALRDMRELFA 60
           MVYNFSAGPAVLPKEVLQQAADEMLDWHGSGMSVMEMSHRGKEYMSIIE AL D+R L  
Sbjct: 1   MVYNFSAGPAVLPKEVLQQAADEMLDWHGSGMSVMEMSHRGKEYMSIIEAALADVRALMN 60

Query: 61  VPANYKILFLQGGAIAENAIIPMNLAGLRGKGA----GVADYVNTGSWSTKSIKEARRYC 116
           +P+NYK+LFLQGGAIAENAIIPMNLA LR        GVADY+NTGSWSTKSIKEA RYC
Sbjct: 61  IPSNYKVLFLQGGAIAENAIIPMNLAALRSPAGKHEVGVADYINTGSWSTKSIKEAGRYC 120

Query: 117 EVNVAASSEAEKFARIPARDTWKLSRNAAYVHLCTNETIDGVEYQFTPDVAADTDNAPIV 176
            VNVAASS   KFA IPAR  WKLSRNAAYVH+C+NETIDGVEYQ+TP+VAADTD AP+V
Sbjct: 121 TVNVAASSADRKFASIPARADWKLSRNAAYVHICSNETIDGVEYQYTPEVAADTDGAPLV 180

Query: 177 ADMSSHILSRAVDVSKYGVIYGGAQKNIGPAGLTIVIVREDLLGHALPICPSAFDWKIVA 236
           ADMSSHILSR VDVSKYGVIYGGAQKNIGPAG+TIVIVREDLLGHALP CPSAFDWKIVA
Sbjct: 181 ADMSSHILSREVDVSKYGVIYGGAQKNIGPAGVTIVIVREDLLGHALPFCPSAFDWKIVA 240

Query: 237 DNDSMYNTPPTYAIYIAGLVFQWLKRQGGVAEMERRNIAKADLLYDYLDSTEFYTTRIAK 296
           DNDSMYNTPPTYAIYIAGLVFQW+KRQGGVA +E RNIAKA LLY YLDST+FY+ RIA 
Sbjct: 241 DNDSMYNTPPTYAIYIAGLVFQWIKRQGGVAALEARNIAKARLLYGYLDSTDFYSNRIAA 300

Query: 297 ECRSRMNAPFFLHDETLNETFLAGAKERGLLQLKGHKSVGGMRASIYNAMPMEGVEALVE 356
           +CRSRMN PFFL D+ LN+TFLAGAKERGLLQLKGHKSVGGMRASIYNAMP+EGV+ALV+
Sbjct: 301 DCRSRMNVPFFLRDDALNDTFLAGAKERGLLQLKGHKSVGGMRASIYNAMPIEGVQALVD 360

Query: 357 YLRHFERTH 365
           YL+ FE+ H
Sbjct: 361 YLKDFEKQH 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,157,693
Number of extensions: 48325
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)