BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0090.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans...   157   1e-39
gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans...   149   5e-37

>gi|300313353|ref|YP_003777445.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 372

 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 183/346 (52%), Gaps = 22/346 (6%)

Query: 36  IIKLASNENPLGMPESAR--LAMQQAVADIGRYPDANGFDLKAAISAKYGVPQDW-VTLG 92
           ++KL + ENP  +P   R  LA + A  ++ RYP  +   LKAAI    GVP  + V LG
Sbjct: 39  MVKLDAMENPYLLPAELREQLAQRLAALELNRYPVPSYTALKAAICKGLGVPAGYDVLLG 98

Query: 93  NGSNDILELAAHAFVQPRQSVVYAQYGFLVYALATQAVGARVWSIGPRAIEVKAKDFGHD 152
           NGS++++ L + A  QP ++++  + GF++Y ++ +  G     +          D   D
Sbjct: 99  NGSDELITLLSVACAQPGRTILAPEPGFVMYGVSAKMAGLEYVGVP------LCADLSLD 152

Query: 153 LQAMAAAI-ADDTRLVFIANPNNPTGTFLPAAELEAFLKAVPQHVVVVIDEAYNEYLSAD 211
           L AM AA+ A    + ++  PNNPTGT    A++   ++A   + +VV+DEAY  + ++ 
Sbjct: 153 LPAMLAAMEAHKPVITWLGYPNNPTGTLYEMADVLRIVEAAAPYGLVVVDEAYQPFAAST 212

Query: 212 LQYESTDWVRTFPNLIVSRTMSKAYGLAGLRVGFAIGQPGVTDLLNRIRQPFNVNSLAQA 271
           L       +    NL++ RT+SK  GLAG+R+G+    P +   L+++R P+NVN L +A
Sbjct: 213 LM----PALPQHNNLVLMRTVSK-LGLAGIRLGYLSAAPALLRELDKVRPPYNVNVLTEA 267

Query: 272 AAVAALTDKAFLQKSAEVNAQGYKQLIQAFDEL-GLTYVPSYGNFVLVKVGDDDGAGARV 330
           AA+  L     LQ  A    Q    L      L G+   PS  NF+L++V D D    +V
Sbjct: 268 AALFMLEHLDVLQAQAARLRQARSALAAELAALDGVQVFPSAANFLLIRVPDAD----KV 323

Query: 331 NLALLKQGIIVRPVGNYG--LPQWLRITVGLPEENAAFIAALKTIL 374
             +LL   ++V+  G     L   LRITV   +ENA F+AALKT L
Sbjct: 324 CASLLAHRVLVKNAGRMHVLLQNCLRITVSSDKENAMFLAALKTAL 369


>gi|300313983|ref|YP_003778075.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score =  149 bits (375), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 36/376 (9%)

Query: 10  VRALAPYQAGKPIAEVAREFGLDESKIIKLASNENPLGMPESARLAMQQAVADIGR-YPD 68
           V  L PY  G+   ++AR        ++KL +NE+P G    A  A+ + V+D  R YP+
Sbjct: 9   VSRLTPYTPGEQ-PKIAR--------LVKLNTNESPYGPSPLALQAIAREVSDSLRLYPN 59

Query: 69  ANGFDLKAAISAKY---GVPQDWVTLGNGSNDILELAAHAFVQPRQSVVYAQYGFLVYAL 125
            +   LK AI+ ++   GV    V +GNGS+++L  A HA +Q  + +++    +  Y  
Sbjct: 60  PDAEPLKQAIARRHAADGVSVREVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYP- 118

Query: 126 ATQAVGARVWSIGPRAIEVKAKDF---GHDLQAMAAAIADDTRLVFIANPNNPTGTFLPA 182
                 A ++ +  RA+ + A+DF     D      AI      +   NPN PTG  L  
Sbjct: 119 ----TYAGLYQVEYRAVPL-AEDFTLRSEDYLGHGQAIGG----IIFPNPNAPTGCLLGL 169

Query: 183 AELEAFLKAVPQHVVVVIDEAYNEYLSADLQYESTDWVRTFPNLIVSRTMSKAYGLAGLR 242
           A++E  L+  P+ VVVV DEAY ++        +   V+ +PNL+V +T+SK+  LAG+R
Sbjct: 170 ADVERILQGNPERVVVV-DEAYIDFGGQ----SAIPLVQRYPNLLVVQTLSKSRALAGMR 224

Query: 243 VGFAIGQPGVTDLLNRIRQPFNVNSL---AQAAAVAALTDKAFLQKSAEVNAQGYKQLIQ 299
           VGFA+G   + D L R++  FN   L   A A A AA+ D+ + +K+  +       L  
Sbjct: 225 VGFAVGHADLIDALERVKNSFNSYPLDRPAIAGATAAIEDEDYFRKTCNMVIASRTALAA 284

Query: 300 AFDELGLTYVPSYGNFVLVKVGDDDGAGARVNLALLKQGIIVRPVGNYGLPQWLRITVGL 359
               LG   +PS  NF+ V+    D A      AL   GIIVR   +  + Q+LRIT+G 
Sbjct: 285 QLAGLGFQVLPSAANFLFVRHPQHDAAQL--AAALRADGIIVRHFKSERISQFLRITIGT 342

Query: 360 PEENAAFIAALKTILG 375
            E+    + AL+  LG
Sbjct: 343 DEDCGVLVEALRRHLG 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,177,260
Number of extensions: 49228
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 7
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)