BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0089.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312986|ref|YP_003777078.1| prephenate dehydrogenase [Herba...   428   e-121

>gi|300312986|ref|YP_003777078.1| prephenate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  428 bits (1100), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/291 (72%), Positives = 244/291 (83%)

Query: 2   KKIVVFGVGLIGGSFALALKKAGAVAHVVGVGRSEASLSRAKELGIIDEACTSVADAVRD 61
           KK+V+FGVGLIGGSFALAL++AG  AH+VGVGRS  SL RA+ELGIID   T  A AV+ 
Sbjct: 3   KKVVIFGVGLIGGSFALALRRAGQAAHIVGVGRSLQSLERARELGIIDAVATDAASAVQG 62

Query: 62  ADLILLAAPVAQTGAILESIEPHLQLGTVVTDAGSTKADVVAAARLALGDKVGQFVPGHP 121
           ADLIL+AAPVAQTG IL SI PHL+   +VTDAGSTK+DVVAAAR+ALGD++ QF+P HP
Sbjct: 63  ADLILVAAPVAQTGPILASIAPHLEPQAIVTDAGSTKSDVVAAARMALGDRIVQFIPAHP 122

Query: 122 IAGREQNGPDAALADLYVGKKTVITALDENAEQDVERVAQAWQACGASIHRLSPQEHDAV 181
           IAGRE++GP+AALA+LY GKK VITAL EN   DVE VA AW+ACGA IHRLSPQEHDAV
Sbjct: 123 IAGREKHGPEAALAELYEGKKVVITALPENDAADVEIVAAAWRACGAVIHRLSPQEHDAV 182

Query: 182 FASVSHLPHLLAYALVDDIASKPHAPILFQYAASGFRDFTRIAGSSPEMWRDISLANRAA 241
           FASVSHLPH+LA+ALVDDIA+KPHA  LFQYAASGFRDFTRIA SSPEMWRDI+LANR A
Sbjct: 183 FASVSHLPHVLAFALVDDIAAKPHAATLFQYAASGFRDFTRIAASSPEMWRDITLANRDA 242

Query: 242 LLHELDAYLVQLIRMRKLLVERDSDGLEKIYANAQQARHNWTAAIETAERQ 292
           LL E+DAYL+QL  +R ++   D  G+EKIYA+AQ AR  W AAIE AER+
Sbjct: 243 LLTEVDAYLLQLQNIRAMIAAGDGPGIEKIYASAQHARQQWAAAIEAAERK 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 903,935
Number of extensions: 37089
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)