BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0087.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312984|ref|YP_003777076.1| cytidylate kinase [Herbaspirill...   388   e-109

>gi|300312984|ref|YP_003777076.1| cytidylate kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 222

 Score =  388 bits (997), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/220 (85%), Positives = 201/220 (91%)

Query: 1   MNTANIPVIAIDGPTASGKGTVAQRVAQQLGFHYLDSGALYRLTALSAIRRGIEMNDEHG 60
           M    IPVI IDGPTASGKGTVAQ+VAQQLGFHYLDSGALYRLTALS +RRGI +NDEH 
Sbjct: 1   MEKPKIPVITIDGPTASGKGTVAQKVAQQLGFHYLDSGALYRLTALSVLRRGIALNDEHA 60

Query: 61  LAKSAEHLNCHFDGGHIFLANEDVSQAIRAEEVGNTASKIAVLATVRHALYGLQLSFRKA 120
           LAK+AEHL+CHFDG HIFL+NEDV+QAIRAEEVGNTASKIA L TVR ALYGLQLSFRK 
Sbjct: 61  LAKAAEHLHCHFDGAHIFLSNEDVTQAIRAEEVGNTASKIAALITVRQALYGLQLSFRKP 120

Query: 121 PGLVADGRDMGTVIFPHAPLKVFLTASVEARAQRRYKQLIDKGFPANMEDLSKDLRERDA 180
           PGLVADGRDMGTVIFP A LKVFLTASVEARA RRYKQLIDKGF AN+EDLS+DL+ERD 
Sbjct: 121 PGLVADGRDMGTVIFPGARLKVFLTASVEARATRRYKQLIDKGFSANIEDLSRDLKERDE 180

Query: 181 RDMNRASAPLKPAEGAYLLDTSDMTADEAVKQVLSWYAAL 220
           RDM+R+SAPLKPAEGAY LDTSDMTADEAV+QVLSWYAAL
Sbjct: 181 RDMSRSSAPLKPAEGAYHLDTSDMTADEAVQQVLSWYAAL 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 676,120
Number of extensions: 26845
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)