BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0082.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312980|ref|YP_003777072.1| N-acetylglucosaminyl transferas...   706   0.0  

>gi|300312980|ref|YP_003777072.1| N-acetylglucosaminyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/391 (87%), Positives = 360/391 (92%)

Query: 1   MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLPHGYFKGLNFLLNEQPDKAIDAFI 60
           MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLP GYFKGLNFLLNEQPDKAIDAFI
Sbjct: 1   MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLPRGYFKGLNFLLNEQPDKAIDAFI 60

Query: 61  EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEHKAHAQYELGQDYLK 120
           EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEH  HA YELGQDYLK
Sbjct: 61  EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEHHGHALYELGQDYLK 120

Query: 121 AGLLDRAEETFHLLNDTQYGAQAGRALLEIYQREKEWSRAIKAAETLQAAGAGGRQKEIA 180
           AGLLDRAEE+F+ L DTQY AQAGRALLEIYQREKEW RAI AAE LQA GAGGRQ+EIA
Sbjct: 121 AGLLDRAEESFNRLIDTQYSAQAGRALLEIYQREKEWERAISAAEILQATGAGGRQREIA 180

Query: 181 QFYCELAEDELVHTHPDAAMSLLEKALATDRKSVRATMLLGDVYRAKGDIEAALLAWRRV 240
           QFYCELA DELV T+ +AAM+LLEKALA DRKSVRATML+GD  RA+GDIE AL  WRRV
Sbjct: 181 QFYCELAADELVRTNTEAAMALLEKALAADRKSVRATMLMGDALRAQGDIEGALETWRRV 240

Query: 241 EHQSVPHAALVAQRLLDGYQAVGRMQEGLNLLRSYLAEAPSIDLLEVVFKAVLELEGVEA 300
           EHQSVPH ALVAQRL+DGY AVGR+QEG+NLLR+YLAEAPSIDLLEVVFKAVLE++GV+A
Sbjct: 241 EHQSVPHTALVAQRLMDGYVAVGRVQEGINLLRAYLAEAPSIDLLEVVFKAVLEVDGVDA 300

Query: 301 ANQLVSDELRRTPTLLGLDKFLEARMLNAPAEIRPELAVVKTLVHSYTQKLARYQCTHCG 360
           AN LVSDELRRTPTLL LDKFLEARM+NAP   R EL+VVKTLVH YTQKLARYQC+HCG
Sbjct: 301 ANLLVSDELRRTPTLLALDKFLEARMMNAPQTARSELSVVKTLVHGYTQKLARYQCSHCG 360

Query: 361 FKARQFYWHCPGCNHWETYPPRRTEELNVMN 391
           FKARQFYW CPGC+ WETYPPRRTEELNVMN
Sbjct: 361 FKARQFYWQCPGCSRWETYPPRRTEELNVMN 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,245,771
Number of extensions: 51437
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)