BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0077.p
         (481 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase [...   516   e-147

>gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score =  516 bits (1329), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/481 (54%), Positives = 340/481 (70%), Gaps = 13/481 (2%)

Query: 2   IHLQPVILSGGSGTRLWPFSREQYPKQLLSLVGAETMLQATALRVQAADATYSLVNAPVV 61
           + + PVILSGG+GTRLWP SR  YPKQLL LV  +TMLQ T  RV A    +    AP+V
Sbjct: 1   MKIYPVILSGGAGTRLWPLSRAAYPKQLLPLVSEQTMLQETVARVCA----WPEALAPLV 56

Query: 62  VCNEEYRFITAEQLRAVGKESKHIVLEPVGRNTAPALTLAALLAAQNGDDPVLLIMPADH 121
           VC  E+RF+ AEQLR +      IVLEP G+NTAPA+  AAL   +   D V+L++PADH
Sbjct: 57  VCGNEHRFMIAEQLREMDVRPHAIVLEPQGKNTAPAVAAAALQLMRQDPDAVMLVLPADH 116

Query: 122 VIRDVDAFQSAIRQAVPHAAAGAMVTFGIVADRPETGYGYIQRGAQIDDA--YAIARFVE 179
           VI + +AF  A+R A+     GA+VTFGI   +PETGYGYI RGA   D   +A+ RFVE
Sbjct: 117 VITNREAFHEAVRAAMRSVEQGALVTFGITPSKPETGYGYILRGAAHGDTGNFAVERFVE 176

Query: 180 KPDAAIAQGYVDSGDYLWNSGLFVMRASVWLRAIERFQPAMSKACRAAFDGGKQDNDFYR 239
           KPD   AQG+V  G Y WNSG+F++RA  +L  +E  +P ++ A + A      D DF R
Sbjct: 177 KPDLERAQGFVADGRYYWNSGMFLLRARDYLEELELHRPLIAAAVKDAVAKAYTDLDFCR 236

Query: 240 IDKAAFEACPADSIDYAVMEKLADTPDLGIEGRIIPLSAGWSDVGAWDALWQVAEKDGAG 299
           + +AAF A PA+SIDYAVME             ++P   GWSDVG+W AL +V   D  G
Sbjct: 237 LGEAAFGASPAESIDYAVMENTR-------RAVVVPADIGWSDVGSWSALQEVMPADAQG 289

Query: 300 NVIRGDVMLEQASDNLVFAQGRLVACVGIDNMVIVETPDAVLVADKNKMQDIKSIVSRLK 359
           NV RGDV L+  S++LV A+ R+VA +G+ ++++VET DAVLVA K+K QD+K +V +LK
Sbjct: 290 NVTRGDVYLDGVSNSLVRAESRMVAVLGLQDLIVVETDDAVLVAHKDKAQDVKGVVDQLK 349

Query: 360 GQQRGEALTHRKIHRPWGWYDSIDSGERFQVKRIVVNPGCSLSLQMHHHRAEHWIIVKGT 419
            ++R E + H++++RPWG Y+S+D+G+RFQVKRI+V PG  LSLQMH+HRAEHW++V G+
Sbjct: 350 DKKRSEHIHHKRVYRPWGSYESVDAGDRFQVKRIIVKPGEKLSLQMHYHRAEHWVVVSGS 409

Query: 420 ARITRGEEVFLLSENQSTYIPLGVTHRLENPGKFPLEMIEVQSGSYLGEDDIVRFDDTYG 479
           A +TRGEEV LLSEN+S Y+P+GVTHRLENPGK PL +IEVQSGSYLGEDDIVRFDD Y 
Sbjct: 410 ALVTRGEEVTLLSENESIYLPIGVTHRLENPGKLPLHLIEVQSGSYLGEDDIVRFDDVYK 469

Query: 480 R 480
           R
Sbjct: 470 R 470


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,543,198
Number of extensions: 65486
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 392
Effective length of database: 1,198,455
Effective search space: 469794360
Effective search space used: 469794360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)