BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0070.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311616|ref|YP_003775708.1| hypothetical protein Hsero_2301...   431   e-122

>gi|300311616|ref|YP_003775708.1| hypothetical protein Hsero_2301
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score =  431 bits (1109), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/352 (59%), Positives = 255/352 (72%), Gaps = 14/352 (3%)

Query: 15  ASMLSVMLALAGCAASPTERS---YEVAEVGSFHVGGKQVTLAGLPSREIVFTEGAASRK 71
           A  L+ ++ LAGC    +ER+     VAEVGSFH+GG+Q TL GLP++E+ FT  +   +
Sbjct: 8   ALTLAGLILLAGCTTPASERAQAPVAVAEVGSFHIGGRQATLDGLPAKEVRFTPTSPLTR 67

Query: 72  VDPNGDFETGQMYAQYIKLKNP--RARYPLLMWHGGGLAGTTWETKPDGAPGWQQFFLTQ 129
           +DPNG+FE GQMY QY++L     RA YPLLMWHGGGL+G TWE+ PDG PGWQ FFL  
Sbjct: 68  IDPNGEFEVGQMYVQYVRLAPAARRAPYPLLMWHGGGLSGVTWESTPDGRPGWQMFFLRA 127

Query: 130 GHSVYVTDAVERGXGHSVYVTDASWSRYPEVYKTEPFFRTKQEGWELFRIGAAGSYDSDP 189
           GH VYV+DAVERG         ASW+RYPE+Y++EP FRTK+E WELFRIG AGSY  D 
Sbjct: 128 GHDVYVSDAVERGR--------ASWARYPELYRSEPVFRTKKEAWELFRIGPAGSY-QDA 178

Query: 190 AKRVAYAGTQFPVAAYDQFSKQGIPRWASNDAATQAAYDALVQKVCPCVIVVHSQGGNFA 249
           A R AY  TQFPVAA+DQF KQG+PRW +NDAAT+AAYDALVQ+VCPCV++VHSQG  FA
Sbjct: 179 AHRSAYPDTQFPVAAFDQFMKQGVPRWLTNDAATEAAYDALVQRVCPCVLMVHSQGSTFA 238

Query: 250 INAALRAPDKIKAIVAVEGSGAPDPDKVDISALKNIPFLFVWGDFIDQNTSWKQYIVAPD 309
              A R P+KIKA+V VE SGA DPDKVD++ L  +P LFVWGD I     W+       
Sbjct: 239 YTLANRYPEKIKAVVGVEPSGALDPDKVDLTPLSRVPLLFVWGDKIAATPRWQGIQAPMK 298

Query: 310 KFRRALRAQGGVADRLDLPQHGIKGNSHMLMMDRNSDQVAALVQAWMDKNGL 361
           K   AL+A+GG AD +DLP  GI GNSH++MMD NSDQ+AALVQ W+   GL
Sbjct: 299 KMIAALKAKGGRADEIDLPARGISGNSHLMMMDANSDQIAALVQDWLVAQGL 350


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,250,901
Number of extensions: 55444
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)