BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0067.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 510 e-146 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 289 2e-79 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 181 8e-47 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 179 3e-46 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 174 7e-45 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 510 bits (1313), Expect = e-146, Method: Compositional matrix adjust. Identities = 246/269 (91%), Positives = 255/269 (94%) Query: 1 MTPALFLDDITCTFVSKDDRNQRYTAVANTTLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 60 MTPAL D+ITCTFVSKDDR+QRYTAVANT LAIAPGEFVSVVGPTGCGKSTLLNVGAGL Sbjct: 1 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 60 Query: 61 LQPSSGSIKVFGEELVGINQRAGYMFQAEALMPWRSALQNVIAGLQYRGLEDGEAKALGE 120 LQPSSGS+KVFGEEL GIN+RAGYMFQAEALMPWRSALQNVIAGLQYRG E+ A LGE Sbjct: 61 LQPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGE 120 Query: 121 QWLARVGLKGFGDRYPHQLSGGMRKRVALAQTLIMDPDIILMDEPFSALDIQTRQLMENE 180 QWLARVGL+GFGDRYPHQLSGGMRKRVALAQTLI+DPDIILMDEPFSALDIQTRQLMENE Sbjct: 121 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 180 Query: 181 VLDLWNAKKKAVLFITHDLDEAIAMSDRVVVLSAGPATHPIGEFTIDLPRPRDVAEIRTH 240 VLDLWNAKKKAVLFITHDLDEAIAMSDRV+VL+AGP THPIGEF IDLPRPRDVAEIR H Sbjct: 181 VLDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMH 240 Query: 241 PRFVELHQQIWSVLRDEVLKGYQQQKTAA 269 PRFVELHQQIW VLRDEVLKGYQQQK AA Sbjct: 241 PRFVELHQQIWDVLRDEVLKGYQQQKRAA 269 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 289 bits (740), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/257 (53%), Positives = 194/257 (75%), Gaps = 3/257 (1%) Query: 2 TPALFLDDITCTFVSKDDRNQRYTAVANTTLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 61 TPA+ L +++C F++ D R A+ + ++++A GEFV+VVGPTGCGKST L++ GLL Sbjct: 19 TPAIELRNVSCRFITADGRAT--VALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLL 76 Query: 62 QPSSGSIKVFGEELVGINQRAGYMFQAEALMPWRSALQNVIAGLQYRGLEDGEAKALGEQ 121 +P+ G ++V G+ + GI+ R G++FQ +A+ PWRS +NV AG +RG +A AL ++ Sbjct: 77 KPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADE 136 Query: 122 WLARVGLKGFGDRYPHQLSGGMRKRVALAQTLIMDPDIILMDEPFSALDIQTRQLMENEV 181 W+ RVGL FGD YPHQLSGGMRKRVALAQT I P+I+LMDEPFSALD+QTR LM++E+ Sbjct: 137 WIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDEL 196 Query: 182 LDLWNAKKKAVLFITHDLDEAIAMSDRVVVLSAGPATHPIGEFTIDLPRPRDVAEIRTHP 241 L LW+A +V+F+THDL+EAIA++D+V VL+A PAT + IDLPRPR + E+R Sbjct: 197 LRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLK-SVYPIDLPRPRVMEEVRYEQ 255 Query: 242 RFVELHQQIWSVLRDEV 258 RF+++ ++IW+ LR+EV Sbjct: 256 RFIDISRRIWADLREEV 272 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 181 bits (458), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 151/252 (59%), Gaps = 7/252 (2%) Query: 18 DDRNQRYTAVANTTLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSIKVFGEELVG 77 DDR A+ + L I G+FV ++GP+GCGKSTLLN AG PSSG I + + Sbjct: 22 DDRE--VVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSE 79 Query: 78 INQRAGYMFQAEALMPWRSALQNVIAGLQYRGLEDGEAKALGEQWLARVGLKGFGDRYPH 137 G +FQ AL PW + QNV GL+ +G E Q L ++GL F R+P Sbjct: 80 PGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPK 139 Query: 138 QLSGGMRKRVALAQTLIMDPDIILMDEPFSALDIQTRQLMENEVLDLWNAKKKAVLFITH 197 LSGGMR+RVA+A+ L +D I+LMDEPF ALD TR+ +++E+L +W+ +K ++F+TH Sbjct: 140 DLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTH 199 Query: 198 DLDEAIAMSDRVVVLSAGPATHPIGEFTIDLPRPRDVAEIRTHPRFVELHQQIWSVLRDE 257 ++EAI ++DR+VV++ P T + ++LPR RD A+ P F L +++ ++ +E Sbjct: 200 SIEEAIYLADRIVVMTYRPGTVK-RDMLVNLPRLRDPAD----PEFNALKRELGQLVMEE 254 Query: 258 VLKGYQQQKTAA 269 + + + AA Sbjct: 255 QQRHHNAEMKAA 266 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 179 bits (453), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 102/240 (42%), Positives = 152/240 (63%), Gaps = 6/240 (2%) Query: 27 VANTTLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSIKVFGEELVGINQRAGYMF 86 +A L I GEFV ++GP+GCGKSTLLN AG Q SG I V G+ + G G +F Sbjct: 22 MAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGF-QDVSGEISVDGKRVKGPGLDRGVVF 80 Query: 87 QA-EALMPWRSALQNVIAGLQYRGLEDGEAKALGEQWLARVGLKGFGDRYPHQLSGGMRK 145 Q+ EAL PW S +NV GL+ RG+ E +A E++++ VGLK D++P +LSGGMR+ Sbjct: 81 QSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 146 RVALAQTLIMDPDIILMDEPFSALDIQTRQLMENEVLDLWNAKKKAVLFITHDLDEAIAM 205 R +A+ L+ +P ++LMDEPF ALD QTR+++++E+ +W + ++F+THD+ EAI + Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 206 SDRVVVLSAGPATHPIGEFTIDLPRPRDVAEIRTHPRFVELHQQIWSVLRDEVLKGYQQQ 265 +DRVV ++AGP H + LP PRD A+ P + L+ +I + EV + + Q Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPAD----PACMALYARIRDDIGAEVTRVLRAQ 256 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 174 bits (441), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 13/211 (6%) Query: 27 VANTTLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSIKVFGEELVGINQRAGYMF 86 + T IA GE V++VGP+GCGKSTLL++ AGL +PSSGS+ G+ + G + MF Sbjct: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMF 77 Query: 87 QAEALMPWRSALQNVIAGLQYRGLEDGEAKALGEQWLARVGLKGFGDRYPHQLSGGMRKR 146 Q AL PW + QNV L+++ ++ +A WL V LKGF YPHQ+SGGMR+R Sbjct: 78 QENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQR 137 Query: 147 VALAQTLIMDPDIILMDEPFSALDIQTRQLMENEVLDLWNAKKKAVLFITHDLDEAIAMS 206 ALA+ I P +L+DEPF ALD TR +++ + DL + V+ +THD+DEA+ ++ Sbjct: 138 AALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLA 197 Query: 207 DRVVVLSAGPA-------------THPIGEF 224 DR+ V S PA TH + EF Sbjct: 198 DRIFVFSPRPAKVLKEFNLVHHEKTHDLSEF 228 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 880,659 Number of extensions: 37984 Number of successful extensions: 499 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 135 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)