BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0064.p
         (404 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310065|ref|YP_003774157.1| N-acyl-D-glucosamine 2-epimeras...   276   2e-75

>gi|300310065|ref|YP_003774157.1| N-acyl-D-glucosamine 2-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  276 bits (707), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 162/351 (46%), Positives = 205/351 (58%), Gaps = 9/351 (2%)

Query: 11  FRTPAFLHERLQRDIGFFTQHAFDPAGGFFHYLNDDGSVYDTS-RHLVNSTRMVFCHALA 69
           F +  FLH  +   + F+ +HA DP GGFFHYL D+G VY+   RHLV++TR+VF   +A
Sbjct: 6   FESRRFLHAHVADTLAFYDRHAIDPLGGFFHYLKDNGRVYNAGHRHLVSATRLVFTQTMA 65

Query: 70  YRFNGKEEH-RDAVRHGLKFLQEQHWQ-PSYGGYAWVLKDGVPVDRTQHCYGLAFVLLAY 127
           Y  +G   + R A R   +  + +H   P  G YAW L+D    D T   YG AFVLLA 
Sbjct: 66  YTHSGHTRYLRQARRAWDELARFRHASGPLQGLYAWTLQDERIEDATVMAYGQAFVLLAC 125

Query: 128 AHAFEIGVGEARAHIDATFNHMEKLFWSEQYGLYADEATPEGVVSDYRGQNANMHSCEAL 187
           AHA  IG+    A  DA F  ME  F+   +  YADE TP G +  YRGQNANMH CEA 
Sbjct: 126 AHAHRIGLCGEDAVADA-FERMETAFFEPAHQAYADEITPAGELIGYRGQNANMHMCEAC 184

Query: 188 LAAFEATGEPRFLHRAERLARNITVRQAALANGWIWEHYSADWKIDWEYNKHDNTNMFRP 247
           L+A+E TG+ R+L RA  L        A    G +WEHY  DW  D +YNK   +N+F+P
Sbjct: 185 LSAYEVTGQRRYLERALALIERFVFDLAQHTQGLVWEHYHQDWTPDLDYNKGKRSNIFKP 244

Query: 248 WGYQPGHMTEWSKLLLILERHAEHLQDDASWLAPRARALFDATIPVAWDEEHGGLFYGIA 307
           WG+Q GH TEW+KLLLI   HA     +A++L PRA  L  A     WD  HGGL YG  
Sbjct: 245 WGFQTGHQTEWAKLLLIAHGHAP----NAAFL-PRAIELHQAAWTYGWDSIHGGLIYGFG 299

Query: 308 PDNSVCDGDKYFWVQAESLATAALLAQRTGEDIYWEVYDQLWQYSMQHLID 358
            +    D DKYFWVQAES A+A  L + TGE  + + Y  LW +S QH++D
Sbjct: 300 LEREPYDRDKYFWVQAESFASAWRLWRATGEPAFRDQYRMLWAWSWQHMVD 350


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,436,231
Number of extensions: 63573
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,207,925
Effective search space: 382912225
Effective search space used: 382912225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)