BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0063.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310430|ref|YP_003774522.1| transcription regulator protein...   320   6e-89
gi|300311078|ref|YP_003775170.1| transcription regulator protein...    69   3e-13

>gi|300310430|ref|YP_003774522.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  320 bits (819), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 155/159 (97%), Positives = 157/159 (98%)

Query: 47  RASKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKPGDAVVAISQRG 106
           RA+KIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLK GD VVAISQRG
Sbjct: 128 RANKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKAGDCVVAISQRG 187

Query: 107 GNAALLRSVQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLAHLVV 166
           GNAALLRS+QLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLAHLVV
Sbjct: 188 GNAALLRSIQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLAHLVV 247

Query: 167 IDILAVGLALRRGPEFRKKMQNAQKSLQKFDMQFDSFFR 205
           IDILAVGLALRRGPEFRKKMQNAQKSLQKFDMQFDSFFR
Sbjct: 248 IDILAVGLALRRGPEFRKKMQNAQKSLQKFDMQFDSFFR 286


>gi|300311078|ref|YP_003775170.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score = 68.9 bits (167), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%)

Query: 57  GTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKPGDAVVAISQRGGNAALLRSVQ 116
           G S +++++A+++  R G P  +Y D  +  + A+ L   D ++  S  G    LL S +
Sbjct: 143 GGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAATLDKDDVLLVFSTTGSVPELLASCE 202

Query: 117 LARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLAHLVVIDILAVGLAL 176
           +AR+ G  +I +   G+PLA+LA VL+PI        + P S+R A +  +D+L + LAL
Sbjct: 203 VAREYGVKLIAITALGSPLAKLADVLLPIKTLETDLIFKPSSSRYAMMATLDMLVLELAL 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 654,103
Number of extensions: 27041
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)