BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0057.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate aldol...   359   e-101
gi|300310363|ref|YP_003774455.1| 2-dehydro-3-deoxy-6-phosphogala...    73   1e-14

>gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate
           aldolase/-keto-3-deoxy-6-phosphogluconate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  359 bits (922), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/203 (88%), Positives = 188/203 (92%)

Query: 4   LEIMRTSAVIPVIAIDKLEHAVPLAKALVAGGIRVLEVTLRTEHGLPAIRAIAEQVPDAI 63
           LEIMR S VIPVIAIDK EHAVPLA+ALVAGGIRVLE+TLRTEHGLPAIRAIAE VPDAI
Sbjct: 5   LEIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLEITLRTEHGLPAIRAIAESVPDAI 64

Query: 64  VGVGTLTSPEEFTASRDAGAVFGVSPGLTAALIAAAKSSGLPLLPGVMTPSEVMAAREAG 123
           VGVGTLTSPEEFTASRDAGAVFGVSPGLT ALI AAK SGLPLLPGVMTPSEVMAAREAG
Sbjct: 65  VGVGTLTSPEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAAREAG 124

Query: 124 FRQLKLFPAMQAGGIGMLNAIAGPLGDVTFCPTGGVSQETAPQFLACKNVACVGGSWLTP 183
           FRQLKLFPA+ AGG+GMLN IAGPL DV+FCPTGG++QETAPQFLACKNV CVGGSWLTP
Sbjct: 125 FRQLKLFPAVPAGGVGMLNGIAGPLADVSFCPTGGITQETAPQFLACKNVVCVGGSWLTP 184

Query: 184 KNAIEIGDWHKITALAKAASALR 206
           K AIE GDW KIT +AKAASAL+
Sbjct: 185 KAAIEAGDWDKITEIAKAASALK 207


>gi|300310363|ref|YP_003774455.1|
           2-dehydro-3-deoxy-6-phosphogalactonate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 5   EIMRTSAVIPVIAIDKLEHAVPLAKALVAGGIRVLEVTLRTEHGLPAIRAIAEQVP-DAI 63
           + +R++ +I ++   +   A  +  AL   G R++EV L +   L +I A+ + +P D I
Sbjct: 10  DALRSTGMIAILRGVRNAEAEAIGAALYESGFRIIEVPLNSPEPLLSITALRKSLPADCI 69

Query: 64  VGVGTLTSPEEFTASRDAGAVFGVSPGLTAALIAAAKSSGLPLLPGVMTPSEVMAAREAG 123
           VG GT+  P +    +DAG    V P    A+I AA+ +GL   PGV T +E  AA + G
Sbjct: 70  VGAGTVLKPAQVEQVKDAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVTEAFAALDNG 129

Query: 124 FRQLKLFPAMQAGGIGMLNAIAGPLGDVTFCPTGGVSQETAPQFLAC 170
              LK+FPA Q G   +    A    D+   P GG++ E    F A 
Sbjct: 130 ADVLKMFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVFHAA 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,864
Number of extensions: 29553
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)