BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0052.p
         (93 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310437|ref|YP_003774529.1| cytochrome c551/c552 transmembr...   149   6e-38

>gi|300310437|ref|YP_003774529.1| cytochrome c551/c552 transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 104

 Score =  149 bits (375), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 79/89 (88%), Gaps = 1/89 (1%)

Query: 6   VSAQASANADLAKAKNCMACHSIQTKIVGPAFKDVAKKYAGQKDAEDKLTQKVLKGGSGV 65
           +SA+A ANA LAK+KNCMACHS+  KIVGPAFK+VAKKYAGQKDAE KLTQKVL GG GV
Sbjct: 16  ISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKYAGQKDAEAKLTQKVLNGGGGV 75

Query: 66  WGAIPMPAN-AQVSEAEARTLVKWVLTLK 93
           WGA+PMPAN  QVSEAEAR LVKWVLTLK
Sbjct: 76  WGAVPMPANKGQVSEAEARELVKWVLTLK 104


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.126    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 261,943
Number of extensions: 8548
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 93
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 30
Effective length of database: 1,321,565
Effective search space: 39646950
Effective search space used: 39646950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)