BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0050.p (169 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312760|ref|YP_003776852.1| transcription regulator protein... 329 8e-92 gi|300313708|ref|YP_003777800.1| AsnC family transcription regul... 121 3e-29 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 94 8e-21 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 93 9e-21 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 89 3e-19 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 329 bits (843), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 155/166 (93%), Positives = 163/166 (98%) Query: 3 KYHTLDKVDRKLLNLLQKDNQIPTRILAEKLHISQPTCLRRIRELREAGIINAEVAMVDP 62 K+HTLDKVDRKLLN+LQKDNQI TR+LAEKLHISQPTCLRRIR+LREAGII+AEVAMVDP Sbjct: 4 KHHTLDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRDLREAGIISAEVAMVDP 63 Query: 63 FALGYGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAY 122 FALGYGMLAFLEISLNNQSD+HMQ+FEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAY Sbjct: 64 FALGYGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAY 123 Query: 123 YQFVRRVISGSGNVRHFQSRFPMKRAKFATRIAFDEKAAEIQVRVP 168 YQFVRRVISGSGNVRHFQSRFPMKRAKF TRIAFDEKAAE+ VRVP Sbjct: 124 YQFVRRVISGSGNVRHFQSRFPMKRAKFTTRIAFDEKAAEVLVRVP 169 >gi|300313708|ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 121 bits (304), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 92/155 (59%) Query: 7 LDKVDRKLLNLLQKDNQIPTRILAEKLHISQPTCLRRIRELREAGIINAEVAMVDPFALG 66 LD +DR++L LQ D + LA ++H S PTCLRR++ L E G+I +VA++D + Sbjct: 5 LDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQKVA 64 Query: 67 YGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFV 126 + A +EI+L+ Q +E Q FE +A E V QCY VS D+ L V V DM +Y+ Sbjct: 65 AALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMSSYHALA 124 Query: 127 RRVISGSGNVRHFQSRFPMKRAKFATRIAFDEKAA 161 R+ + NVR+ +S F + R+KF T I D+ A+ Sbjct: 125 HRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAAS 159 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 93.6 bits (231), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 75/121 (61%) Query: 6 TLDKVDRKLLNLLQKDNQIPTRILAEKLHISQPTCLRRIRELREAGIINAEVAMVDPFAL 65 TLDK+D ++L +LQKD +I + L E++ +S C+ R+R + G+I A V+P +L Sbjct: 10 TLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESL 69 Query: 66 GYGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQF 125 G +L F+EI+LN++S ++F + + + EV +C+ VSG++DY + + M Y + Sbjct: 70 GATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKL 129 Query: 126 V 126 + Sbjct: 130 L 130 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 93.2 bits (230), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 84/148 (56%) Query: 7 LDKVDRKLLNLLQKDNQIPTRILAEKLHISQPTCLRRIRELREAGIINAEVAMVDPFALG 66 LDK+ +K+L LQ D +I LA ++++S CL R+R+L+EAG I A ++P L Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 67 YGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFV 126 +L F+E+ L+ + + EF++ + E+M+C+ V+G +DY + V DM+AY +F+ Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 127 RRVISGSGNVRHFQSRFPMKRAKFATRI 154 + + VR + M+ K R+ Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRL 151 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 83/146 (56%) Query: 7 LDKVDRKLLNLLQKDNQIPTRILAEKLHISQPTCLRRIRELREAGIINAEVAMVDPFALG 66 LD D ++LN+LQ+++ I LA ++++S L R++ L GII+ VA+ DP LG Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 67 YGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFV 126 + F+++ L Q E + +FE ++ EVM+ Y ++G+ DY L + V D+ F+ Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 127 RRVISGSGNVRHFQSRFPMKRAKFAT 152 ++ +++ +S F +K+ K+ T Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKT 148 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 468,542 Number of extensions: 17052 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 9 Length of query: 169 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 90 Effective length of database: 1,245,805 Effective search space: 112122450 Effective search space used: 112122450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)