BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0047.p
         (223 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312758|ref|YP_003776850.1| ribose 5-phosphate isomerase [H...   364   e-102

>gi|300312758|ref|YP_003776850.1| ribose 5-phosphate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  364 bits (934), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/223 (86%), Positives = 209/223 (93%)

Query: 1   MTQDELKQAVARAAIDYVVDGEIIGVGTGSTANFFIDELARIKDRIKGAVASSEATAERL 60
           MTQDELKQAVA+AAI+YVVDGEIIGVGTGSTANFFIDEL +IK RIKGAVASSEATAERL
Sbjct: 1   MTQDELKQAVAKAAIEYVVDGEIIGVGTGSTANFFIDELGKIKHRIKGAVASSEATAERL 60

Query: 61  RGHGIKVFDLNDVETMPVYIDGADEINAQGAMIKGGGAALTREKIVASVAQKFVCIADGS 120
           R HGI VFDLN+VETMPVYIDGADEIN  GAMIKGGGAALTREKIVASVAQKFVCIADGS
Sbjct: 61  RSHGITVFDLNEVETMPVYIDGADEINGGGAMIKGGGAALTREKIVASVAQKFVCIADGS 120

Query: 121 KLVDVLGKFPLPVEVIPMATSVAARKLSALGCEAKLRLKDGKPLVTDNGCYILDVVGLSI 180
           KLV+VLGKFPLPVEVIPM+ +V ARKL+ALG E +LR+KDGKP+VTDNGCYI+DV+GLSI
Sbjct: 121 KLVEVLGKFPLPVEVIPMSHAVVARKLAALGGEPRLRVKDGKPVVTDNGCYIIDVLGLSI 180

Query: 181 TEPAEIEAAINNIVGVVTVGLFARQGADVCLLGTPDGVKKLEF 223
           T+PA++E  INNIVGVVT GLFARQGA+VCLLGT DGVKKLEF
Sbjct: 181 TDPADVEDKINNIVGVVTNGLFARQGANVCLLGTADGVKKLEF 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 697,535
Number of extensions: 29476
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,231,600
Effective search space: 173655600
Effective search space used: 173655600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)