BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0043.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase [Herbasp...   246   8e-67
gi|300313429|ref|YP_003777521.1| zinc protease-like signal pepti...    65   3e-12

>gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 929

 Score =  246 bits (629), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/217 (54%), Positives = 157/217 (72%)

Query: 2   IQQTLAGWKSAAPYQRMLQDYAEVAPTRQFINTPDKENGTYLAKLGLDIRDEDVDYPALV 61
           I Q   GW SAAPY R+LQ +A++   R  ++TPDKENG Y A+  + + D D DYPAL 
Sbjct: 711 IDQAFGGWTSAAPYARVLQTWADIPAKRLLVDTPDKENGVYFARQNIRLSDTDPDYPALA 770

Query: 62  VANYLIGGASMKSRLADRVRQREGLSYSIGTSLSVGALSNAGQFGIGAIAAPQNLDKVDA 121
           VAN+L+GG+S+KSRLADRVRQ++GLSY I + L V AL++AG   I AIAAPQNLDKVDA
Sbjct: 771 VANFLLGGSSLKSRLADRVRQQDGLSYGIYSGLQVAALTDAGHLTIYAIAAPQNLDKVDA 830

Query: 122 AIREELQRLITEGFTSEELDRAKSGIRQQREQSRAQDDTISNGWVNLLDLDRTYAWAAQL 181
           A+REE+   + +GF+ EEL RAKSGI QQR Q RA +D ++  W  L++ DR + W  ++
Sbjct: 831 AVREEIALALKDGFSEEELQRAKSGILQQRNQQRAGNDNVAATWTLLMNQDRNFLWQQEI 890

Query: 182 DDRIAALTLDQLNDTLRKRIVPAKMSVAIARDEEKAK 218
           D ++A+LTL Q+N  LRK + PA+M+  IARDE K +
Sbjct: 891 DRKLASLTLAQVNAALRKYVDPARMTTVIARDETKVR 927


>gi|300313429|ref|YP_003777521.1| zinc protease-like signal peptide
           protein [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 10/165 (6%)

Query: 50  IRDEDVDYPALVVANYLIGGASMKSRLADRVRQREGLSYSIGTSLSVGALSNAGQFGIGA 109
           I+  D D+ AL V NY++GG    SRL D VR++ GLSYS+ +  S   L+  G F IG 
Sbjct: 274 IQRGDPDFFALTVGNYVLGGGGFVSRLTDEVREKRGLSYSVYSGFS--PLAQPGPFQIGL 331

Query: 110 IAAPQNLDKVDAAIREELQRLITEGFTSEELDRAK---SGIRQQREQSRAQ-DDTISNGW 165
               +   +     R  L + + EG T+ EL  AK   +G    R  S A+  + +S   
Sbjct: 332 QTKKEQTAEALRVTRVTLDKFMQEGPTAAELKAAKDNLAGGFALRIDSNAKLLENLSVIG 391

Query: 166 VNLLDLDRTYAWAAQLDDRIAALTLDQLNDTLRKRIVPAKMSVAI 210
              L LD    W     +RI A+++  +    RK + P ++S  I
Sbjct: 392 FYGLPLDYLDHWI----ERIRAVSVQDVRAAFRKHVHPEELSTII 432


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 681,523
Number of extensions: 28339
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)