BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0035.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...   287   5e-79
gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...    65   5e-12
gi|300312748|ref|YP_003776840.1| chromate transport protein [Her...    57   1e-09

>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  287 bits (734), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 178/207 (85%), Gaps = 7/207 (3%)

Query: 10  STPPVMPEIRVVPTSRELFLGFLGLGMTAFGGALPLAHRMVVERHRWLSEDEFVELLGLC 69
           STP ++   R VPT+RELFLGFLGLGMTAFGGALPLAHRM+VER +WL++ EFVELLGLC
Sbjct: 15  STPDLLAPERPVPTTRELFLGFLGLGMTAFGGALPLAHRMIVERRKWLTDPEFVELLGLC 74

Query: 70  QFLPGGNIINLSVALGMRFRGVKGALAAILGLIAVPSIVVVMLGILYQHYQHDPLIKHLF 129
           QFLPGGNIINLSVALGM+FRG KGALA + GLIAVPS+VV++LG++YQH+QHDP +KHLF
Sbjct: 75  QFLPGGNIINLSVALGMKFRGWKGALAGVTGLIAVPSMVVILLGMIYQHFQHDPNVKHLF 134

Query: 130 AGLAAAASGLLIQMAVKIALPLRKNLVLAGLATICFIAIAWLRIPLLWTMLVMTPVSVAI 189
           AGLAAAA+GLLIQMAVKIALPLRKNLVLAG+A +CF+AIA LRIPLLW MLVMTP+SV +
Sbjct: 135 AGLAAAAAGLLIQMAVKIALPLRKNLVLAGVAVVCFVAIALLRIPLLWVMLVMTPISVVL 194

Query: 190 TARFAGKTAAK-------DEARKGAAS 209
           TAR+  + AAK       DE +K  A 
Sbjct: 195 TARYGERFAAKPQSVPVQDEGKKEGAQ 221


>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 64.7 bits (156), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 11/110 (10%)

Query: 26  ELFLGFLGLGMTAFGGALPLAH-----RMVVERHRWLSEDEFVELLGLCQFLPGGNIINL 80
           E+FL FL LG+T+FGG  P AH        V R  WLSE  + +L+ +CQFLPG +   +
Sbjct: 94  EVFLVFLRLGLTSFGG--PAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQV 151

Query: 81  SVALGMRFRGVKGALAAILGLIAVPSIVVVM---LGILYQHYQHDPLIKH 127
            +A+G+   G  GALAA LG   +PS +++M   L +L Q +     + H
Sbjct: 152 GMAIGVLRAGYGGALAAWLGFT-LPSALLLMGLALSVLQQAHWLSAEVVH 200


>gi|300312748|ref|YP_003776840.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 176

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 31  FLGLGMTAFGGA---LPLAHRMVVERHRWLSEDEFVELLGLCQFLPGGNIINLSVALGMR 87
           F  L + AFGG    LP   R VVE H+W+S ++F  L  L Q  PG N++ +++ +G  
Sbjct: 12  FTQLSVLAFGGGNTILPEMQRQVVEVHQWMSAEDFSALFALGQAAPGPNLMVVTL-VGWH 70

Query: 88  FRGVKGALAAILGLIAVPSIVVVMLGILYQHYQHDPLIKHLFAGL------AAAASGLLI 141
             G  G L   L      SI+ +++  +++ ++  P  +H+ AGL        AAS LLI
Sbjct: 71  VAGFWGMLVTSLAKFGPSSIITIIMLHVWERFKDKPWRRHVQAGLLPVTGGLVAASALLI 130

Query: 142 QMA 144
             A
Sbjct: 131 TQA 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,947
Number of extensions: 22595
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)