BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0033.p
         (759 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312747|ref|YP_003776839.1| arginine/lysine/ornithine decar...  1484   0.0  

>gi|300312747|ref|YP_003776839.1| arginine/lysine/ornithine
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 750

 Score = 1484 bits (3842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/759 (93%), Positives = 735/759 (96%), Gaps = 9/759 (1%)

Query: 1   MKFRFPIVIIDEDFRSENTSGLGIRALADAIKEEGMEVLGVTSYGDLSQFAQQQSRASAF 60
           MKFRFPIVIIDEDFRSENTSGLGIRALADAI+ EGMEVLGVTSYGDL+QFAQQQSRASAF
Sbjct: 1   MKFRFPIVIIDEDFRSENTSGLGIRALADAIEAEGMEVLGVTSYGDLAQFAQQQSRASAF 60

Query: 61  ILSIDDEEFGAGSSEETDFALKSLRAFVGEIRHKNADIPIYLYGETRTSRDIPNDILREL 120
           ILSIDDEE GAGS EETD ALK+LRAFV EIRHKNADIPIYLYGETRTSR IPND+LREL
Sbjct: 61  ILSIDDEEMGAGSDEETDHALKALRAFVSEIRHKNADIPIYLYGETRTSRHIPNDVLREL 120

Query: 121 HGFIHMFEDTPEFVARKLARHIIREAKSYLDGLAPPFFRALVHYAQDGSYSWHCPGHSGG 180
           HGFIHMFEDTPEFVAR    HIIREAKSYLDGLAPPFFRALV YAQDGSYSWHCPGHSGG
Sbjct: 121 HGFIHMFEDTPEFVAR----HIIREAKSYLDGLAPPFFRALVDYAQDGSYSWHCPGHSGG 176

Query: 181 VAFLKSPIGQMFHQFFGENMLRADVCNAVEELGQLLDHTGPVADSERNAARIFNADHCYF 240
           VAFLKSP+GQMFHQFFGE MLRADVCNAVEELGQLLDHTGPVA+SERNAARIFNADHCYF
Sbjct: 177 VAFLKSPVGQMFHQFFGERMLRADVCNAVEELGQLLDHTGPVANSERNAARIFNADHCYF 236

Query: 241 VTNGTSTSNKMVWHSTVAPGDIVVVDRNCHKSILHSIIMTGAIPVFLMPTRNHLGIIGPI 300
           VTNGTSTSNKMVWHSTVAPGDIVVVDRNCHKSILHSIIMTGAIPVFLMPTRNHLGIIGPI
Sbjct: 237 VTNGTSTSNKMVWHSTVAPGDIVVVDRNCHKSILHSIIMTGAIPVFLMPTRNHLGIIGPI 296

Query: 301 PLEEFTMESIRRKIEANPFAREAVNKKPRILTITQSTYDGVVYNVETLKEMLDGEIDTLH 360
           PLEEFT+ESI++KIEANPFAREA NKKPRILTITQSTYDGVVYNVETLK+MLDGEI+TLH
Sbjct: 297 PLEEFTLESIQKKIEANPFAREAKNKKPRILTITQSTYDGVVYNVETLKDMLDGEIETLH 356

Query: 361 FDEAWLPHATFHDFYKDMHAIGKDRPRAKKSMIFSTQSTHKLLAGLSQASQILVRESETV 420
           FDEAWLPHATFHDFYKDMHAIGKDRPRAKKS+IFSTQSTHKLLAGLSQASQILVRESETV
Sbjct: 357 FDEAWLPHATFHDFYKDMHAIGKDRPRAKKSLIFSTQSTHKLLAGLSQASQILVRESETV 416

Query: 421 QLDQDAFNEAFLMHTSTSPQYSIIASCDVEXAAMMEAPGGTALVEESILEALDFRRAMKK 480
           +LD+DAFNEAFLMHTSTSPQYSIIASCDV  AAMMEAPGGTALVEESILEALDFRRAMKK
Sbjct: 417 KLDEDAFNEAFLMHTSTSPQYSIIASCDV-AAAMMEAPGGTALVEESILEALDFRRAMKK 475

Query: 481 IDQEFGQDWWFQVWGPNSFSADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIVT 540
           IDQEFG +WWFQVWGPNSF+ADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIV 
Sbjct: 476 IDQEFGDEWWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIVN 535

Query: 541 PGLSLDGKFGENGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQ 600
           PGL+L+G+FGE GIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQ
Sbjct: 536 PGLALNGQFGETGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQ 595

Query: 601 FKDDYDKNQPIWRILPEFAAANQGRNARYERLGLRDLCQQIHETYRAYDVARLTTEMYLS 660
           FKDDYDKNQPIWRILPEFA     RN RYERLGLRDLCQQIHETYRAYDVARLTTEMYLS
Sbjct: 596 FKDDYDKNQPIWRILPEFAQ----RNPRYERLGLRDLCQQIHETYRAYDVARLTTEMYLS 651

Query: 661 DMQPAMKPSDAFSKMAHREIDRVPLDELEGRITSILLTPYPPGIPLLIPGEIFNKTIVDY 720
           DMQPAMKPSDAFSKMAHREI+RVPLDELEGR+TSILLTPYPPGIPLLIPGEIFNKTIVDY
Sbjct: 652 DMQPAMKPSDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEIFNKTIVDY 711

Query: 721 LKFARDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVRQ 759
           LKFARDFNEKFPGFETDVHGLVKREVNGRRDYFVDCV+Q
Sbjct: 712 LKFARDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVKQ 750


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,298,794
Number of extensions: 94963
Number of successful extensions: 235
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 1
Length of query: 759
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 666
Effective length of database: 1,179,515
Effective search space: 785556990
Effective search space used: 785556990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)