BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0030.p
         (441 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312744|ref|YP_003776836.1| glucans biosynthesis glucosyltr...   434   e-122

>gi|300312744|ref|YP_003776836.1| glucans biosynthesis
           glucosyltransferase H [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  434 bits (1115), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/396 (61%), Positives = 286/396 (72%), Gaps = 37/396 (9%)

Query: 30  LTLAPEQRRALLAHVSGQDAGDAMRNLHGMLA---GEQHNLHDNPAQDSIAARLELAYPH 86
           + L+PEQR+ L A      +GD + +LH +LA   G   +     AQ S+ ARL L YP 
Sbjct: 1   MPLSPEQRQDLAARAGAIGSGDPVADLHRVLAEASGLDASQAGPAAQASVDARLRLLYPA 60

Query: 87  AAADAXPGDT---------------------IKVAPPLNRRSMVPRPWGTLNPLSRWVEE 125
           A   A P                        I V PP++R+SMVPRPWG LNP SRWVEE
Sbjct: 61  ATPSAVPAAQAALTVQGAPVPPIGQERGQPRIPVGPPMHRKSMVPRPWGELNPFSRWVEE 120

Query: 126 ATRAF-----------EQRAARRKGLPP--KEQAFVEDTLDLPDSPDPRGYWTHSGNVRR 172
             R             + RA   +  PP   E  ++ED LD  ++PDP+G+W H+GNVRR
Sbjct: 121 ENRRLERRPSRWRRARKGRAKVVETPPPVDDEPRYIEDHLDQSEAPDPKGHWQHTGNVRR 180

Query: 173 VVLLILMLMQSALATYFMSDVLPYHGEKPLEMVILGLFGLLFCWVSAGFWTAMTGFLVLM 232
           + LLILM++Q+++ATYFMSDVLPYHG KPLEMV+L LFGLLF WVSAGFWTAMTGFLVLM
Sbjct: 181 ITLLILMVLQTSMATYFMSDVLPYHGTKPLEMVVLFLFGLLFLWVSAGFWTAMTGFLVLM 240

Query: 233 RGDDPYLISHEQAGPKWIAPDARTAIVMPICNEDVARVFAGLRATYESVQRSGDLDRFDF 292
           RGDD YLISHE+AG   IAP+ARTAIVMPICNEDVARVFAGLRATYES++R+G +  FDF
Sbjct: 241 RGDDKYLISHEKAGNTEIAPEARTAIVMPICNEDVARVFAGLRATYESLERTGQIQHFDF 300

Query: 293 FVLSDSGESDICTAEMQAWAALCKEVDGFGRIFYRHRRRRVKRKSGNIDDFCRRWGADYR 352
           F+LSDSGE+DIC AE  AW  LC+E  GFGRIFYRHRRRRVKRKSGN+DDFCRRWGADYR
Sbjct: 301 FILSDSGEADICAAETAAWNRLCRETGGFGRIFYRHRRRRVKRKSGNLDDFCRRWGADYR 360

Query: 353 YMLVLDADSVMSGQCLSTLVRLMEAHPGAGIIQTAP 388
           YM+VLDADSVM+G+CL+ L RLMEAHPGAGIIQTAP
Sbjct: 361 YMVVLDADSVMTGECLTKLTRLMEAHPGAGIIQTAP 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,269,267
Number of extensions: 48454
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,203,190
Effective search space: 424726070
Effective search space used: 424726070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)