BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0027.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312743|ref|YP_003776835.1| membrane-fusion protein [Herbas...   515   e-147
gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible...   164   1e-41

>gi|300312743|ref|YP_003776835.1| membrane-fusion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  515 bits (1327), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/357 (71%), Positives = 300/357 (84%), Gaps = 4/357 (1%)

Query: 2   ALVLAIAAGAAGWYGYRQRHPQAVP----VRLETVIAERSDIEQVVNAIGNVAVQNYVDV 57
           ++ L I  G   W   RQ+ P   P    V+LETV  ER+D+EQVVNA GNV  Q+YVDV
Sbjct: 27  SVALVIVLGGGYWLYSRQQPPPPAPKPIPVKLETVTVERADLEQVVNATGNVVAQDYVDV 86

Query: 58  GTKVSGQISDVYVGIGETVKEGKLLVTVSPVVQAGRAENNRAQMARLKAELAGQNAQLDF 117
           G+KV+GQISDV V +GETVK GKLL TV+P VQ+ R ENNRA +ARLKAELAGQNAQLDF
Sbjct: 87  GSKVAGQISDVDVVVGETVKAGKLLATVAPAVQSSRIENNRATLARLKAELAGQNAQLDF 146

Query: 118 AQLQFQRQTQLKAENATRQETYESSRMGMYSAAAKVDAINAQIQQLDAAMKEDEAIQKQT 177
           AQLQFQRQTQLKAENATR+E+YESSRM MY+AAA+VDA NAQIQQ +AA++EDEA+QKQT
Sbjct: 147 AQLQFQRQTQLKAENATREESYESSRMNMYAAAARVDATNAQIQQTEAAIREDEAVQKQT 206

Query: 178 RIVAPISGTVVALSARIGQTLSANQDVLMRIADLSKMSVQARVAEEDVTRLHKGMTAYFT 237
           RI AP+SGT+V L+AR GQ ++ANQ+ LMRIADLS+M+VQ  VAEEDVTRL KGMTAYFT
Sbjct: 207 RIEAPVSGTIVTLNARPGQMVAANQEALMRIADLSRMTVQVPVAEEDVTRLQKGMTAYFT 266

Query: 238 TPGYPGKRWAGKLRQIMLLPADDSGRQGKKAFYTVLFDVANPSRELMAGMTADVFFVLDK 297
           TPGYPGKRW+GKLRQIMLLP DDSGRQGKKAFYTV FDVANPSRELM+GM+ADV+FVL +
Sbjct: 267 TPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAFYTVFFDVANPSRELMSGMSADVYFVLAR 326

Query: 298 AERAVTIPASLVVKPDIKGMQKLKVLHADGKLETREVRIGLRNADKAQVLTGLAEGE 354
           AE   TIP +LV KP + G Q +KV+ ADGKLETR+++IG+R+ ++AQVL+GL EGE
Sbjct: 327 AEHVPTIPRTLVTKPGMDGTQTVKVVLADGKLETRKIKIGIRDNERAQVLSGLKEGE 383


>gi|300311362|ref|YP_003775454.1| HlyD family secretion, possible
           efflux component [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 184/362 (50%), Gaps = 26/362 (7%)

Query: 14  WYGYRQRHPQAVPVRLETVIAERSDIEQVVNAIGNVAVQNYVDVGTKVSGQISDVYVGIG 73
           W       P A P  L +  A  +DI+ VV A G V     V VG +VSGQI  + V +G
Sbjct: 26  WIIRSVLTPPAPPTYL-SATARVADIQDVVLASGTVKAYKQVSVGAQVSGQIKSLKVALG 84

Query: 74  ETVKEGKLLVTVSPVVQAGRAENNRAQMARLKAELAGQNAQLDFAQLQFQRQTQLKAENA 133
           + VK+G+L+  +  + QA    +    +  L+A+L  + A L  AQL + RQ  + A +A
Sbjct: 85  DQVKKGQLVAEIDSLTQANALASAEFSLQNLQAQLRAKEASLKQAQLAYARQKMMLAGDA 144

Query: 134 TRQETYESSRMGMYSAAAKVDAINAQIQQLDAAMKEDEAIQK--QTRIVAPISGTVVALS 191
           + +E +ES+   + +  A + A+ AQI+  D A+K D A      TRI +PI G VVA+ 
Sbjct: 145 SSRENFESAEATLNTTQADIAALQAQIK--DGAIKVDTARLNLGYTRISSPIEGQVVAIV 202

Query: 192 ARIGQTLSANQD--VLMRIADLSKMSVQARVAEEDVTRLHKGMTAYFTTPGYPGKRWAGK 249
           A+ GQT++ANQ    ++++A +  ++++A+++E DV R+  G   +FT  G P  R+   
Sbjct: 203 AQEGQTVNANQSTPTIIKVARMDTVTIKAQISEADVVRVKPGQPVFFTILGDPDHRYRTT 262

Query: 250 LRQIMLLPADDSGRQGK-----------------KAFYTVLFDVANPSRELMAGMTADVF 292
           LR I   PA DS  Q                     +Y  L DV NP  +L   MT  V 
Sbjct: 263 LRAIE--PAPDSILQDDTSSSTTSITSSSSASSTAIYYNGLLDVPNPDGKLRISMTTQVN 320

Query: 293 FVLDKAERAVTIPASLVVKPDIKGMQKLKVLHADGKLETREVRIGLRNADKAQVLTGLAE 352
            VL +A  A+ +P++ +      G   ++VL   G+   R+VRIG+      Q++ G+  
Sbjct: 321 IVLSEASNALVLPSTALGAKAADGSYTVRVLDDQGQAHERKVRIGINTNALVQIVEGVKA 380

Query: 353 GE 354
           GE
Sbjct: 381 GE 382


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 952,134
Number of extensions: 36430
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 9
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)