BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0022.p
         (125 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312639|ref|YP_003776731.1| choline dehydrogenase [Herbaspi...   161   1e-41
gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like prot...   145   1e-36
gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase [Herbas...   144   2e-36

>gi|300312639|ref|YP_003776731.1| choline dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  161 bits (408), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 93/125 (74%)

Query: 1   MTFDWKENEIRMTQYVTDRVVDVAKAMKPKLMHAAATKSGEHYDVRPYQTTHTTGGAICG 60
           +T +WKENE +M  Y+  ++  V +AM P+ +  A  K+G  +D R YQ+TH TGGAI G
Sbjct: 469 LTLNWKENEGKMLTYIASQMEKVGQAMNPEKVVKAVRKTGSSWDTRVYQSTHLTGGAIMG 528

Query: 61  DRPGNSVINKYLQSWDVHNLFVMGASAFPQNWAYNPTGMVGALAYWSAAAIRERYLKNPG 120
             P NSV+NKYLQSWDV N+FV GA AFPQN  YNPTG+V ALAY SA AIRE+YLKNPG
Sbjct: 529 TTPKNSVVNKYLQSWDVPNVFVYGACAFPQNMGYNPTGLVTALAYHSAKAIREQYLKNPG 588

Query: 121 PLVQA 125
           PLVQA
Sbjct: 589 PLVQA 593


>gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 590

 Score =  145 bits (366), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 89/125 (71%)

Query: 1   MTFDWKENEIRMTQYVTDRVVDVAKAMKPKLMHAAATKSGEHYDVRPYQTTHTTGGAICG 60
           MTFDW++NE+++ +Y+ D V+ ++K + P  M  +      H+D+  Y +TH  GGAI G
Sbjct: 466 MTFDWRQNELKLQRYLRDIVLKISKELNPDHMSESFLALDSHWDITKYVSTHNVGGAIMG 525

Query: 61  DRPGNSVINKYLQSWDVHNLFVMGASAFPQNWAYNPTGMVGALAYWSAAAIRERYLKNPG 120
           D P +S +NKYLQSWDVHN+FV G +AFPQN+  NPT  +GA+   +A AI+ +YLKNPG
Sbjct: 526 DSPRDSALNKYLQSWDVHNVFVPGGNAFPQNFQANPTATIGAITLMAAHAIKTQYLKNPG 585

Query: 121 PLVQA 125
           PLVQA
Sbjct: 586 PLVQA 590


>gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  144 bits (363), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 84/125 (67%)

Query: 1   MTFDWKENEIRMTQYVTDRVVDVAKAMKPKLMHAAATKSGEHYDVRPYQTTHTTGGAICG 60
            TFDWK+N+IRM++YVTD+ V +A  +K + +       G   D+R YQTTH  GG   G
Sbjct: 469 FTFDWKDNDIRMSRYVTDQAVKIAHELKAREIKVTVKDFGAAPDLRSYQTTHWAGGVAMG 528

Query: 61  DRPGNSVINKYLQSWDVHNLFVMGASAFPQNWAYNPTGMVGALAYWSAAAIRERYLKNPG 120
             P  SV+N+YLQSWDVHN+F +G+  F Q   YNPTG   AL YWSA AIRE+YL +P 
Sbjct: 529 TDPSTSVVNRYLQSWDVHNVFAVGSGVFAQGIGYNPTGAAVALTYWSARAIREQYLNDPR 588

Query: 121 PLVQA 125
           PLVQA
Sbjct: 589 PLVQA 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 449,383
Number of extensions: 17401
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 125
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,264,745
Effective search space: 63237250
Effective search space used: 63237250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)