BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0018.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313811|ref|YP_003777903.1| 3-hydroxyacyl-CoA dehydrogenase...   155   5e-39
gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase...    94   1e-20

>gi|300313811|ref|YP_003777903.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  155 bits (391), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 3/243 (1%)

Query: 4   KIAVIGAGLIGRAWAIVFARAGCSVAIYDAVPEALSACTKLLHDNISDLAKHGLITETPE 63
           ++AV+G G+IG +WA  F   G  V+  D +P+A       +  +   L   GL     +
Sbjct: 17  RVAVVGTGVIGASWAAYFLAQGLEVSAVDPMPQAEQKLRAAIARHWPSLQALGLAEHASQ 76

Query: 64  VVLARIKPASTLAEALKGAALVQENVKETVEVKRQIFAEMDKLAAPDTILTSSTSWIPTS 123
               R++    L  AL+GA  VQEN  E  ++K  +F  MD       +L SS+S +  S
Sbjct: 77  ---ERLRFYDQLEAALEGADFVQENGPEREDLKIDLFRRMDAALPAQVVLASSSSGLLMS 133

Query: 124 EFSEHLPGRHRILVAHPVNPPYLVPLVELAPAPWTSAETVKRAHDIYTRAGQSPVLLKKE 183
           +         R+++ HP NPP+L+PLVE+     TS E V+ A D Y   G+ P+ ++KE
Sbjct: 134 KVQAACRHPQRVVLGHPFNPPHLIPLVEVIGGAQTSPEAVQTALDFYAAIGKKPIHVRKE 193

Query: 184 ITGFLLNRIQGAVLNEALNLYENGYASSEDLDKVLKDGLGLRWSFMGPFETIDLNAPEGV 243
           + G + NR+Q A+  EA +L E G AS+ED+D  +  G GLRW+ MGP+  + ++  EG 
Sbjct: 194 VKGHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMGPYLNLHMSGGEGG 253

Query: 244 LDY 246
           + +
Sbjct: 254 IQH 256


>gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 6/234 (2%)

Query: 5   IAVIGAGLIGRAWAIVFARAGCSVAIYDAVPEALSACTKLLHDNISDL-AKHGLITETPE 63
           +AVIG+G +G   A V A AG  V +YD+   A       +  N+  L +K  L     +
Sbjct: 16  VAVIGSGTMGAGIAQVAAVAGHPVLLYDSREGAAGKAIGAICTNLDKLVSKDKLTPALAQ 75

Query: 64  VVLARIKPASTLAEALKGAALVQENVKETVEVKRQIFAEMDKLAAPDTILTSSTSWIPTS 123
               RI  A +L E L  A LV E + E +  K ++F +++ + +   IL ++TS +  +
Sbjct: 76  AASQRISVAQSLEE-LHQADLVIEAIVEQLAAKHELFGKLEAIVSTRCILATNTSSLSIT 134

Query: 124 EFSEHLPGRHRILVAHPVNPPYLVPLVELAPAPWTSAETVKRAHDIYTRAGQSPVLLKKE 183
           + +  L    R++  H  NP  ++ LVE+     + A   +  HD     G++PV + + 
Sbjct: 135 QIAAGLQHPERVVGMHFFNPVPMMALVEIISGLASDAALAQCLHDTALAWGKTPV-MARS 193

Query: 184 ITGFLLNRIQGAVLNEALNLYENGYASSEDLDKVLKDGLGLRWSFMGPFETIDL 237
             GF++NR+      E L +   G A    +D V+++  G R   MGPFE +DL
Sbjct: 194 TPGFIVNRLARPYYAEGLRMLHEGGAQPATIDAVMREAGGFR---MGPFELMDL 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 944,852
Number of extensions: 36642
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)