BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0016.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 153 1e-38 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 147 1e-36 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 146 2e-36 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 144 6e-36 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 139 3e-34 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/198 (45%), Positives = 123/198 (62%), Gaps = 7/198 (3%) Query: 73 GKSTLLKALTGLLKPASGAIRYNGKDIAGLSAPDIARLGIGYVPQGRGLFAGMTVAENLS 132 G+STLLKAL GLL P+ G R+ G+DI+GL IARLG+GYVP+ R +F ++VA+NL Sbjct: 45 GRSTLLKALMGLL-PSRGDCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLL 103 Query: 133 LGRLARKTDSSNGIAWSEEKILHYFPRLKERLHTPADFLSGGEQQMVAVARALSGNVRLL 192 LGR K G W E+ I FP L +R A LSGGEQQM+A+ RAL GN LL Sbjct: 104 LGR---KPGPQPGRGWCEDDIHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLL 160 Query: 193 LLDEPFEGLAPAVVQELFTVFDQLR-REVSIVIVEHNLDLVLALADRVFALERGAVFHTG 251 L+DEP EGLAP +V+++ +LR R V++++VE L L L+ RV+ + RG + G Sbjct: 161 LVDEPTEGLAPQMVEQVARALQELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEG 220 Query: 252 PAEPLLTDLTYRKQILWL 269 L T +++ WL Sbjct: 221 TPTGLSAQETVQRE--WL 236 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 8/188 (4%) Query: 73 GKSTLLKALTGLLKPASGAIRYNGKDIAGLSAPDIARLGIGYVPQGRGLFAGMTVAENLS 132 GK+T LK++ G++ P G + + G+ I+GL + IA G+ VP+ RG+F +TV ENL+ Sbjct: 40 GKTTTLKSIVGVVPPVQGRVLFEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLT 99 Query: 133 LGRLARKTDSSNGIAWSEEKILHYFPRLKERLHTPADFLSGGEQQMVAVARALSGNVRLL 192 + ARK AW E+I FPRLKER LSGGEQQM+A+ARAL + R+L Sbjct: 100 MA--ARKES-----AWGLEEIYAIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVL 152 Query: 193 LLDEPFEGLAPAVVQELFTVFDQLRRE-VSIVIVEHNLDLVLALADRVFALERGAVFHTG 251 +LDEP EGLAP +V E+ Q++ +SI++VE NL++ LADR + +E+G + + G Sbjct: 153 MLDEPVEGLAPVIVDEIVAQIRQIKATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHG 212 Query: 252 PAEPLLTD 259 L D Sbjct: 213 SNAEFLAD 220 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/189 (42%), Positives = 113/189 (59%), Gaps = 10/189 (5%) Query: 73 GKSTLLKALTGLLKPASGAIRYNGKDIAGLSAPDIARLGIGYVPQGRGLFAGMTVAENLS 132 GK++LL L GL + G+IR+ G DIA ++ A G+G+VPQ R +F ++V E+L Sbjct: 42 GKTSLLITLMGLTRLHGGSIRWRGGDIARVATHKRAHAGLGWVPQERFMFPSLSVEEHL- 100 Query: 133 LGRLARKTDSSNGIAWSEEKILHYFPRLKERLHTPADFLSGGEQQMVAVARALSGNVRLL 192 T G W +KI FPRL ER H + LSGGEQQM+A+ARAL + +L Sbjct: 101 -------TVVERGGKWDLQKIYQIFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSIL 153 Query: 193 LLDEPFEGLAPAVVQELFTVFDQLRRE--VSIVIVEHNLDLVLALADRVFALERGAVFHT 250 LLDEP EGLAP +VQEL V +L E +S+++VE + + L+L R L+RG + H Sbjct: 154 LLDEPMEGLAPIIVQELLKVIRRLVSEEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHA 213 Query: 251 GPAEPLLTD 259 ++ LL D Sbjct: 214 SDSQSLLAD 222 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 119/190 (62%), Gaps = 3/190 (1%) Query: 73 GKSTLLKALTGLLKPASGAIRYNGKDIAGLSAPDIARLGIGYVPQGRGLFAGMTVAENLS 132 GK+T ++A++G++KP G + GK+I GL + IAR G+ + P+GR +FA M+V +NL Sbjct: 39 GKTTTMRAISGMIKPKGGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLL 98 Query: 133 LGRLARKTDS--SNGIAWSEEKILHYFPRLKERLHTPADFLSGGEQQMVAVARALSGNVR 190 LG R T + IA E+ L FPRLKER A LSGGEQQM+A+ARA+ N Sbjct: 99 LGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPE 158 Query: 191 LLLLDEPFEGLAPAVVQELFTVFDQLRRE-VSIVIVEHNLDLVLALADRVFALERGAVFH 249 ++LLDEP GLAP +V E+F + +L+ + V++++VE L +AD + LE G + Sbjct: 159 VILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISV 218 Query: 250 TGPAEPLLTD 259 GPA+ L D Sbjct: 219 HGPADKLQND 228 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 4/185 (2%) Query: 73 GKSTLLKALTGLLKPASGAIRYNGKDIAGLSAPDIARLGIGYVPQGRGLFAGMTVAENLS 132 GK+T L+ + GL +P G +R+ G+ I SA IAR G+ VP+GR +F ++V ENLS Sbjct: 42 GKTTTLRTILGLNRPTGGVVRFRGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLS 101 Query: 133 LGRLARKTDSSNGIAWSEEKILHYFPRLKERLHTPADFLSGGEQQMVAVARALSGNVRLL 192 AR+ N W+ EKI FPRLKER H LSGGEQQM+A+ RAL N LL Sbjct: 102 -AFAARRNGRDN--PWTLEKIYQQFPRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLL 158 Query: 193 LLDEPFEGLAPAVVQELFTVFDQLRRE-VSIVIVEHNLDLVLALADRVFALERGAVFHTG 251 +LDE EGLAP V +E+++ LR ++I++++ + ++ AD+ LE+G V G Sbjct: 159 ILDEATEGLAPLVREEIWSCLKALREYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQG 218 Query: 252 PAEPL 256 + L Sbjct: 219 DSAQL 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 917,776 Number of extensions: 40007 Number of successful extensions: 505 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 131 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)